Francisella orientalis Toba 04: OOM_1657
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Entry
OOM_1657 CDS
T02112
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
fna
Francisella orientalis Toba 04
Pathway
fna03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OOM_1657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fna03400
]
OOM_1657
DNA repair and recombination proteins [BR:
fna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OOM_1657
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OOM_1657
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
DEAD
UVR
Kinesin
AAA_30
SWI2_SNF2
eIF3_p135
Microtub_bd
AAA_22
SRP54
PHB_depo_C
UvrD-helicase
DUF87
Motif
Other DBs
NCBI-ProteinID:
AFJ44028
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All DBs
Position
1663072..1665078
Genome browser
AA seq
668 aa
AA seq
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MNKFNLVIKYAPAGDQPNAIKSLVEGINNGLQHQVLLGVTGSGKTYTMANVIQQTQKSCL
IVAHNKTLAAQLYSEFKQYFPDNAVEYFVSYYDYYQPEAYVAASDTYIEKDSSVNEHIEQ
MRLSATKAILERNDVIIVATVSAIYGLGDPEQYMQMLLHLKVGEELGLKKAQTKLVEMQY
SRNDMDFSRGSFRVRGEVLDIFPADSEKDAIRVEFFDDEIEAISVIDSLTSKKIKTLHRA
TIFPSTHYVASKERKDIVIEEIKAELKERVKYFEEEGKLLEAQRIEQRTKYDIEMIQELG
YCTGIENYSRLLSGRAPGDPPPTLIDYLPENALVIVDESHVTLPQFGGMYKGDLSRKSNL
VNYGFRLPSALDNRPLKFNEFESLLPQTIYVSATPANYELEKSQNTVEQVIRPTGLLDPE
VFVRPVAIQVEDALSEINKAIAKEERILITTLTKKMAENLTEYLSEHGVNVRYLHSDIDT
VERVQIIHNLRHGVFDVLVGINLLREGLDMPEVGVLLIFDADKEGFLRSEKSLIQTIGRV
ARNQNGRAILYADVVTKSMKKAMDETLRRRQLQDEYNKKHNITPKTIIKSIDDMLDSSPE
MQKRAYKNNSRLKVDDVDVSAILSMTEASKVIKALEKRMRAYAKELEFEQATAIRDKITE
IKQKFINL
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaataaattcaacctagtaataaagtatgctccagctggtgatcagccaaatgcaatt
aaatccttagttgaaggtattaataatggcttacagcatcaggttttgctaggagttaca
ggctctggtaaaacatatactatggcaaatgtgattcaacaaacacaaaaatcatgtttg
attgttgcacataacaaaactttggcagctcaattatattctgagtttaagcaatatttc
ccagataatgcagttgagtattttgtgtcatattacgattattatcagcctgaggcttat
gttgcagcttctgatacctatatagaaaaagattcatctgtaaatgagcatattgaacaa
atgcgtctgtcagctacaaaagcaatacttgaacgtaatgatgtaattatagtcgcaacc
gtatcggctatttatggtctaggcgatcctgagcaatatatgcaaatgcttttgcaccta
aaagtaggtgaagagctagggctaaaaaaagctcaaactaagttagtagagatgcaatat
tcgcgtaatgatatggatttcagtcgcggaagctttcgagtaaggggagaagtattagat
atattcccagcagactctgagaaagatgctattcgagtagagttttttgatgatgagatt
gaagcgataagtgtgatcgattcattaacttccaaaaaaattaaaacattacacagagca
acaatattcccaagtacgcattatgttgcatcaaaagagcgcaaagatatagttatagaa
gagatcaaagcagaacttaaagaaagagttaaatattttgaggaagagggtaaattactt
gaagctcaaagaatagaacaacgtactaagtatgatattgaaatgattcaagagcttggc
tactgtacaggtatagaaaattattcaagattattatcaggtagagctcctggtgatcca
ccaccaacattgattgactacttaccagaaaatgccttagttatagttgatgagtcgcat
gtgacattaccacagtttggaggaatgtataagggggatttatcgcgtaaatcaaacctt
gttaactatggttttaggttaccttctgctttagataatagacctttgaaatttaatgag
tttgagagtttgttacctcagacaatatatgtatctgcgacaccagctaattatgaactt
gaaaagtctcaaaatactgtagagcaagtaatcagaccaactggtttattagatcctgaa
gtctttgtaagacctgtagctatacaagtagaagatgctttatcagagataaataaagct
atagccaaagaagaaagaattttgataactactttaaccaaaaaaatggcagagaattta
acagagtatctatctgagcatggcgttaatgttagatatttacattctgatatcgatact
gttgagagagtccaaattattcataatttgcgtcatggtgtatttgatgtgctagtgggt
atcaaccttcttagagaggggcttgatatgccagaagtcggagttttattaatttttgat
gctgataaggaagggtttttgcgttctgagaaatctctaattcaaactatcggacgtgtg
gctagaaaccaaaatggtagagctattttgtatgcggatgtagttacaaagtctatgaaa
aaagccatggatgaaactctacgtcgtcgtcaacttcaagatgaatataataagaaacac
aatattacgcctaaaacaatcatcaagagtatagatgatatgttagatagttctccagag
atgcaaaaacgtgcatataaaaataattcgcgcttaaaggttgatgatgtagatgtttcg
gctatactaagtatgactgaagcttcgaaggttattaaagctctagaaaaacgaatgaga
gcttatgcaaaagagcttgaattcgagcaagcaacagcaattagagacaagataactgaa
ataaagcagaagtttattaatttataa
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