Fusobacterium vincentii 3_1_36A2: HMPREF0946_00111
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Entry
HMPREF0946_00111 CDS
T02822
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fnc
Fusobacterium vincentii 3_1_36A2
Pathway
fnc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fnc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0946_00111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fnc03019
]
HMPREF0946_00111
03400 DNA repair and recombination proteins [BR:
fnc03400
]
HMPREF0946_00111
Enzymes [BR:
fnc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF0946_00111
Messenger RNA biogenesis [BR:
fnc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMPREF0946_00111
DNA repair and recombination proteins [BR:
fnc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HMPREF0946_00111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
EEU32038
UniProt:
C7XM91
LinkDB
All DBs
Position
830245..832065
Genome browser
AA seq
606 aa
AA seq
DB search
MKSEALKILKEYYGYDNFREGQEKIIDAILEKRNVLGIMTTGAGKSVCYQIPALIFEGLT
IVISPLISLMKDQVDSLRLIGIEASYLNSTLTSDEYNKILFRIKRGKIKLLYISPERLEN
KFFLNFIKTVKTSMVVVDEAHCVSQWGENFRKSYLRIADFVKYISGENQIQTLAFTATAT
PKIKVDIIEKLNIVNPFIYVDYFNRDNIYFKVVDNSGLDKDLDIDSKPFIVDYLRKHKGK
SGIIYCSTRKNVDDIYNYLKSFDRSVIKYHGGMTKEERDKNQKLFLDDDIEIMVATNAFG
MGINKSNIRYVIHANIPADLESYYQEAGRAGRDGGPAEAILIYNEKDRDIQRYLMEKEAE
GKKDKNYLNKRLKNFNKMLEYTELKTCYREFILKYFGEKMIRNYCGYCENCKKEKNIKDF
SLEAKKIISGVGRAKESLGISTLANMLIGKADTKMLNKGLDKISTFGIMREDKQEWIESF
INYMISEKYLVQSAGSFPVLKLGEKYKDILNGNIKVIRKEDEKINFDYYENDLFKELNSL
RKEISKQENIAPYIIFSDMTLIEMAEKRPKNRWEMLKIKGIGNQKFKSYGERFLERINNY
CMEERL
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatcagaagcactcaaaattttaaaagaatattatggttatgacaattttagagaa
gggcaagaaaaaataatagatgctatcttagagaaaagaaatgttttgggaataatgaca
acaggggcaggaaaatctgtttgttatcaaataccagctctaatttttgaaggtttgaca
atagtaatttcacctttaatatctttaatgaaagatcaagtggatagtttaaggttgata
ggaatagaagcaagttacttaaattcaaccttgacaagtgatgaatataataaaattctt
tttaggataaaaagagggaagataaagttactatatatctcacctgaaagattggaaaat
aaatttttcttaaactttataaaaactgtaaaaacttctatggtagtagtagatgaggca
cactgtgtatcccaatggggagaaaattttagaaagagttatttaagaatagcagatttt
gtaaaatatataagtggagaaaaccaaattcaaactttggcttttactgctactgcaact
cctaaaattaaagtggatataatagagaaattgaatatagtaaatccatttatttatgta
gattacttcaatagagataatatttattttaaagtagttgataatagtggacttgataag
gatttagatatagattctaaaccttttattgtagattatctaagaaaacataaaggaaaa
tcaggaataatttattgttcaactagaaagaatgtagatgatatttataattatttaaaa
agttttgacaggagtgttataaaataccatggtggaatgactaaggaagaaagagataaa
aatcaaaaattgttcttagatgatgatattgaaataatggtagcaactaatgcctttggc
atgggtataaataaatctaatataagatatgtaatacatgcaaatattccagctgactta
gaaagttattatcaagaagcaggtagagctggaagagatggcggacctgctgaggctatc
cttatatacaatgaaaaggatagagatattcaaaggtatttgatggagaaagaagcagag
ggaaaaaaagataaaaattacctcaataaaagattaaaaaattttaataaaatgctagaa
tatacagaattaaaaacttgttatagagaatttattttaaagtattttggtgaaaaaatg
ataaggaattattgtggttattgtgaaaactgcaaaaaagaaaagaatattaaagatttt
tcactggaagcaaagaaaattatttcaggtgtaggaagggcaaaagaaagtttaggtatt
tcaactttggctaatatgttaatagggaaagcagatactaaaatgttaaataaaggactt
gacaaaatttctacatttgggataatgagagaagataaacaggagtggatagaaagcttt
ataaattatatgatttctgaaaaatatttagtgcagagtgcaggaagttttccagttcta
aaacttggtgagaagtataaagatattttaaatggaaatataaaagtaataagaaaagaa
gatgagaaaattaactttgattattatgaaaatgatttatttaaagaattaaattcactt
agaaaggagatttcaaagcaagaaaatattgcaccttatattattttttctgatatgact
cttatagagatggcagagaaaagaccaaaaaataggtgggaaatgttaaaaataaagggt
attggcaatcaaaaatttaaaagttatggagaaaggtttttagaaagaattaataactat
tgtatggaggagagactatga
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