Flavobacterium nakdongensis: RF683_00005
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Entry
RF683_00005 CDS
T10681
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fnd Flavobacterium nakdongensis
Pathway
fnd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fnd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RF683_00005 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fnd03019
]
RF683_00005 (rnr)
03016 Transfer RNA biogenesis [BR:
fnd03016
]
RF683_00005 (rnr)
Enzymes [BR:
fnd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RF683_00005 (rnr)
Messenger RNA biogenesis [BR:
fnd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RF683_00005 (rnr)
Transfer RNA biogenesis [BR:
fnd03016
]
Prokaryotic type
tRNA degradation factors
RF683_00005 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
T4P_PilY1
Motif
Other DBs
NCBI-ProteinID:
WMW77861
UniProt:
A0ABY9RCJ5
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All DBs
Position
complement(join(2329169..2331026,1..320))
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AA seq
725 aa
AA seq
DB search
MSKKIKNVNKKGKDFSALIYKILSNEPLKSFNYKQIAAILEVTDTKNRNEIIKELKYLTA
KEKIQEVERGKYKVLTHSDYYEGYVDMTSRKTGYFVCDELEHDVFIPFLNLNHALDGDKV
KCYIYNKRSSRKPEAEVVEIIERAKTEFVGVIDVQKNFAFVTTANAKMYTDIFVPKNKLH
DAEHGDVVLVQLEDWPKKADSPFGSVIRVLGKPGEHNTEIHAILAEYGLPYDFPIEVETY
ANKMDTSITEEEIKKRRDMRNILTFTIDPKDAKDFDDALSFQILENGNYEIGVHIADVSH
YVQEGTILDEEAYNRATSVYLVDRVVPMLPEVLSNFACSLRPNEEKYTFSAVFQLNTKAE
VVDAWFGRTVIYSDQRFAYEEAQEIIETKSAIIPAHISLTGKDYHAPKPIVEAVLKLDEL
AKILRRKRMAAGAISFDKVEVKFNLNENAEPVGVYFKQSKDANHLIEEFMLLANRKVAEF
IGKQKKTFIYRIHDEPNEDKLMNLQAVISKFGYSINFKSKDTISKSLNSLLEEVQGKKEQ
NMVDTLAIRSMSKASYSTHNIGHYGLAFDYYSHFTSPIRRYPDVMAHRLLQHYIDAGKSV
NEEDYEEKCKHSSQMEGLAAQAERDSVKYMQVKYMQDHKDQEFLGVISGVTEWGIYVEII
ENKCEGMCRIREIKDDYYTFDEKQYALVGELTKSLIQLGDEVYVKVKNADLVKKQLDFWY
IRKNE
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagaagattaaaaatgtaaacaaaaaaggaaaggatttttcagctttaatatat
aaaatactttcaaacgaacctttaaaaagttttaattacaaacaaattgctgctatttta
gaagttacagatactaaaaatagaaatgaaattattaaagaacttaagtatttgactgca
aaagaaaaaattcaagaagtagaacgaggaaaatacaaagtacttacacactctgattat
tatgaagggtatgtagatatgacgtctcgtaaaactggctattttgtttgtgatgaatta
gagcatgatgtttttataccttttttaaatttaaatcatgcgttagacggagataaagtt
aaatgttatatttataataaaagaagttctagaaaaccagaagcagaagtagtagaaatt
atagaacgcgctaaaaccgaatttgtaggtgtaattgatgtacaaaaaaactttgctttt
gtaaccactgcaaatgctaaaatgtataccgatatttttgttcccaagaataaattacat
gatgctgaacatggtgatgtagttttagtacaactagaagattggccaaaaaaagctgac
tctccttttggttcggttataagagttttaggaaaaccaggtgaacacaatactgaaatt
catgctattttagccgaatatggtttaccgtatgattttcctattgaagtagaaacctat
gcaaataaaatggatacttctataaccgaagaagaaattaaaaaacgtcgagatatgcga
aatattttaacgtttacgattgatccaaaagatgctaaagattttgatgatgcgttatcg
tttcaaattttagagaatgggaattatgaaattggtgtacatattgctgacgtttcacat
tatgtacaagaaggtactattttagatgaggaagcatacaacagagctacttcagtatat
ttagtagatagagtagttcctatgttaccagaagtattatctaattttgcttgttcgctt
agacctaatgaagaaaaatatacgttttcagctgtttttcaattaaatactaaagcagaa
gtggtagatgcatggtttggaagaacagttatttattcagaccaacggtttgcttatgaa
gaagcgcaagaaattattgagactaaatcagctattattccagctcatatttcattaact
ggtaaagattatcatgcgcctaaaccaatagtagaagctgtattaaaattagatgaatta
gcaaaaattcttcgtagaaaaagaatggcagctggtgcaatttcgtttgataaagtagaa
gtaaaatttaatttaaatgaaaatgctgaacctgttggagtatatttcaaacaaagtaaa
gatgcaaatcatttaattgaagaattcatgttgttagctaatagaaaagtagctgagttt
attggaaaacaaaagaaaacttttatttatagaattcacgacgaacctaatgaagataaa
ttaatgaatttacaagctgtaatttcaaaatttggttacagtataaattttaaatcaaaa
gatactatttctaaatcattaaattcattattagaagaagtacaaggtaaaaaagaacaa
aatatggttgatactcttgctattagaagtatgagtaaagcttcttattctactcataac
ataggtcattacggtttagcttttgattattatagtcattttacatcacctattcgtcgt
tatccagatgttatggcacaccgtttgctacaacattatattgatgcgggaaaaagtgtc
aatgaagaagattatgaagaaaaatgtaagcattcctcacaaatggaaggtttagccgct
caagctgaacgcgattctgtgaaatacatgcaagtaaaatacatgcaagatcataaagat
caagaatttttaggtgtaatttctggggtgactgaatggggaatttatgtagaaatcatc
gaaaataaatgtgaaggtatgtgtagaattagagaaattaaagatgattattacacgttt
gatgaaaaacaatatgctttagttggcgaattaactaaaagtttaatacaacttggcgac
gaagtgtatgttaaagtaaaaaatgccgatttagttaaaaaacaattggatttttggtat
attagaaagaatgagtag
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