Flavobacterium nakdongensis: RF683_01005
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Entry
RF683_01005 CDS
T10681
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fnd Flavobacterium nakdongensis
Pathway
fnd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fnd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RF683_01005 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fnd03400
]
RF683_01005 (mfd)
Enzymes [BR:
fnd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RF683_01005 (mfd)
DNA repair and recombination proteins [BR:
fnd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RF683_01005 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WMW78891
LinkDB
All DBs
Position
236979..240299
Genome browser
AA seq
1106 aa
AA seq
DB search
MPKIAQLAASLPNRGKFNATGLVGSSLSFVVHALFKKSELPFLVVCNDKEEAAYYLNDLE
QLINDQDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKKPAIIVSYAEAIFEKVV
TRKELERNTLKVNINDKLSIDFINETLFEYSFKRVDFVTEPGEFSVRGGIIDVFSFSNDV
PYRIEFFGDEVDSIRTFDVETQLSKEKVSKITIIPNVENKLLEEKRESFLDYINEKTVLI
LQNTGFIGQQLNRLFEKATETFSKLNTEINHATPEELFVNEAAFLKKALDFSVIELDKNP
VFKTEKTITFHTLPQPSFNKQFDLLLHNLHNNEANGIKNYLFCSNANQANRFKEIFADID
EENHEQTTNKYQAVVFPLYQGFIDEELQIACYTDHQIFERYHKFSIKNGYSKKQTITLKE
LTSLAVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIVYVSIHSLHKISKYN
GKDGAPPKIYKLGSNAWKALKQKTKARVKHIAFNLIQLYAKRRLERGYAFGPDTYMQKEL
ESSFIYEDTPDQIKATADVKMDMENDRPMDRLVCGDVGFGKTEVAVRAAFKAVDNGKQVA
ILVPTTILAYQHYRTFSERLKNMPVTINYLNRFKTAKQKSETIKNLAEGKVDIIIGTHQL
VNKDIKFKDLGLLIIDEEQKFGVNVKDKLKTIAPNVDTLTLTATPIPRTLQFSLMAARDL
SVISTPPPNRYPVETHVIRFNEEAIRDAVSYEIERGGQVFFINNRIENIKEVAGMIQRLV
PNAKIGIGHGQMEGKKLEELMLAFMEGEFDVLVATTIIESGLDVPNANTIFINNANNFGL
SDLHQMRGRVGRSNKKAFCYFITPPYSAMTDEARKRIQALEQFSELGSGFNIAMKDLEIR
GAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKELYPEEADVETKEFVKEIQID
TDFELLFPDEYINNISERLNLYNELSTIKTDVELQAYEQRLIDRFGALPKPALALLNSVR
IKWKAAQLGIDKLIFKQGKMIGYFLGDQQSDFYQTQRFMTVLKFAQQNPMLCKIKEKETK
NGLRLLISFDNVKSVNKALELITSVA
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
ttgccaaaaatagcgcaactagcagcatcattacctaacagaggaaagtttaacgcgaca
ggtttagtgggttcgtcactttcttttgtagttcatgccttatttaaaaaatcagaactt
ccatttttagtcgtgtgtaacgataaagaagaagcggcctattatttaaatgatttagag
caattaattaatgatcaagatgtattgttttacccaggttcatacagaagaccttatcaa
atagaagaaacagacaatgcaaatgtattgcttcgtgctgaggtgctaaatcgtattaat
tctagaaaaaaaccagccattattgtttcgtatgcagaagcgatttttgaaaaagtggtg
actcgaaaagaactagaaagaaataccttaaaggttaatataaacgataaattatcaatc
gattttattaatgaaaccttatttgaatatagttttaaacgtgttgactttgttactgaa
ccaggtgagttttcggttagaggtggaattatagatgttttttccttttcaaatgatgtt
ccgtaccgtattgagttttttggtgatgaggtagatagtattcgtacgtttgatgtggaa
acccaactctccaaagaaaaagtcagtaaaataaccattattccaaatgtggaaaataaa
ctgttggaagaaaaaagagaaagttttttagactacattaacgaaaaaaccgttttaatt
ttacaaaatacaggatttattggccaacaattaaatcgattatttgaaaaagcaacagaa
acattttcaaaattaaatactgaaattaaccacgctactcctgaagaattatttgtaaat
gaagccgcttttttaaaaaaagcattagatttttcagtcattgaattggataaaaatcct
gtttttaaaacagagaaaactatcacatttcacaccttaccacagccttcatttaataaa
caatttgatttattgcttcataatttgcataataacgaagcaaatggtattaaaaattat
ttgttttgttccaatgctaatcaagccaatcgatttaaagaaatttttgcagatattgat
gaagaaaatcatgaacaaacaacgaataaatatcaagccgttgtatttccattgtatcaa
ggttttatagacgaagaacttcaaatagcgtgttacacagaccatcaaatttttgaacgt
taccacaaattttcaatcaaaaatggctattcaaaaaaacaaaccataacacttaaagaa
ttaacttcattagccgttggagattatgttacgcatatagatcatggcattggtaaattt
ggaggattacaaaaaattcaagttgaaggcaaaacccaagaagccataaaattagtttat
gcagataacgatatagtgtacgtaagtattcattcattgcataaaatttcaaaatataat
ggaaaagacggtgcgccgcctaagatttataaattaggaagtaatgcatggaaagcactc
aaacaaaaaacaaaagcccgagttaaacatattgcgtttaatttgattcaattgtatgca
aaaagacgtttagaaagaggatatgcttttggacccgatacgtacatgcaaaaagaatta
gaaagttcgtttatttatgaagacacaccagatcaaataaaagccacagcagatgttaaa
atggacatggaaaacgacagacctatggacagattggtttgtggcgatgttggttttgga
aaaacagaagtagccgtaagagcagcttttaaagcggttgacaatggtaagcaagtagct
attttagtacccacaacgattttggcttaccagcattatagaacgttttctgaacgcttg
aagaacatgcccgtaacgattaattatttgaatcgttttaaaaccgctaaacaaaaatct
gaaacgatcaaaaacttggcagaaggaaaagttgatattattattggtacgcatcaattg
gtaaataaagatattaagtttaaagacttgggattacttattatagatgaagaacaaaaa
tttggcgtaaatgtaaaagataaattgaaaaccattgcaccgaatgtagatactttaaca
ttaacggcaacacctattcctagaacgttgcaattttcattaatggctgctagagactta
tcggttatttctacaccaccaccaaataggtatcctgtagagactcacgtaattagattt
aatgaagaagctataagagatgcagtgtcttatgaaattgaacgtggcggtcaagtattt
ttcatcaataatagaattgaaaacataaaagaggttgccggaatgattcagcgattggta
ccaaatgctaaaataggtattggtcacggtcaaatggaaggtaaaaaactagaagaatta
atgttggcgtttatggaaggcgagtttgatgtattagtagctacaacaattattgaaagc
ggtttagatgtaccaaatgcgaatactatttttatcaataatgccaataatttcggattg
tctgatttacaccaaatgcgtggtcgagtaggtagaagtaataaaaaagccttttgttat
tttattacgcctccttattcggccatgactgatgaagctcgaaaaagaattcaggcatta
gaacaatttagcgaactaggaagtggctttaatattgctatgaaagatttagaaattcga
ggtgcaggtgacttattaggaggcgaacaaagtggatttatcaatgaaatcggttttgat
acgtatcagaaaatcatgaacgaagccattgaagaactaaaagaaaatgagtttaaagag
ctatatccagaagaagcggatgtagaaactaaagaatttgtcaaagaaattcaaattgat
actgattttgaattgctatttccagatgaatacatcaataacatttcagagcgtttaaat
ttgtataatgaattaagcactattaaaaccgacgtagaattacaggcttatgaacagcga
ttaattgatcgttttggagcattgccaaaacctgctttggcgctgttaaatagtgtccga
attaaatggaaagcagcccaattaggtatagataagcttatttttaaacaaggaaaaatg
attggctattttttaggcgatcaacaaagcgatttttatcaaacgcaacgttttatgacc
gtactaaaatttgcacagcaaaacccaatgctttgcaaaatcaaagaaaaagaaactaaa
aatggcctgcgtttactcatcagttttgataatgtaaaatcagtaaacaaagccttagaa
ttgattactagtgttgcgtaa
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