Flavobacterium nakdongensis: RF683_02080
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Entry
RF683_02080 CDS
T10681
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
fnd Flavobacterium nakdongensis
Brite
KEGG Orthology (KO) [BR:
fnd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fnd03032
]
RF683_02080 (topA)
03400 DNA repair and recombination proteins [BR:
fnd03400
]
RF683_02080 (topA)
Enzymes [BR:
fnd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RF683_02080 (topA)
DNA replication proteins [BR:
fnd03032
]
Prokaryotic type
DNA Topoisomerases
RF683_02080 (topA)
DNA repair and recombination proteins [BR:
fnd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RF683_02080 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
WMW78254
LinkDB
All DBs
Position
complement(462822..465308)
Genome browser
AA seq
828 aa
AA seq
DB search
MAKNLVIVESPAKAKTIEKFLGKEYQVESSYGHIADLPSKEIGVDVANDFKPKYEVSSDK
KALVKKLKDLAKNAEMVWLASDEDREGEAIAWHLAEELKLDKSKTKRIVFHEITKTAIQK
AIENPRGIDYNLVNAQQARRVLDRLVGYELSPVLWKKVKGGLSAGRVQSVSVRLIVERER
EIQDFKAEASFSIAAEFTNEAGKVVKAKLAKNFTTQAEAKLFLEKNSAATFKVADLETKP
TKKSPAAPFTTSTLQQEAARKLYLPVGITMQIAQRLYEAGLITYMRTDSVNLSQEAMAAA
QAEIISYYGSEFSKPRNFSTKSKGAQEAHEAIRPTDMSRHTVDLDRDQARLYDLIWKRTI
ASQMSDAALERTNVKINASSHNEQFVATGEVIKFEGFLKVYLEGNDDDDDEQEGMLPALR
INEQLINNFISATERFSRPPSRYTEASLVKKLEELGIGRPSTYAPTISTIINRNYVEKGS
FEGTERKYTQLILKNGELKSAHLKETFGSDKGKLVPTDIGGIVNDFLVKNFETILDYNFT
AKVEQDFDEIAEGKEDWSKMMRDFYNHFHPIVSNVENNAERETGERILGKDPKTGKQVSV
RLGKFGPMAQIGEADDTEKQFASLRADQNISTITLEETLNLFLLPKTLGELDGETIEVNN
GRFGPYVRFGKQFISLPKGEDPLDVTLERAKELIGEKQQADAPIGTYNNLPIQKGVGRFG
PFIKWNGLFINVNKKYNFDQLSQTDLNELIEEKIQKDIDKIIHDWPAEGIRVEKARWGKS
IILKGKIKIELSKDVDVAKLSLEQIKEILDKKTPAKKATAKKTTTKKK
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaatttagtcatcgtggagtcgccagctaaggcaaaaactatcgaaaaattt
ttaggtaaagagtatcaagtagagtccagttatgggcacattgcagatttaccttcaaaa
gagattggggtagatgtggcgaatgactttaaaccaaaatatgaagtttcttcagataaa
aaagcattagttaaaaaattaaaagatttagctaaaaatgcagaaatggtttggttagct
tccgatgaagaccgtgaaggagaagccattgcgtggcatttagccgaagaattaaaacta
gataaaagtaaaacaaaacgtattgtttttcacgaaatcaccaaaacagccattcaaaaa
gcgattgaaaatccaagaggtattgattataatttagttaacgcacaacaagctcgaaga
gttttagaccgtttagtaggatatgaattatcacctgttttatggaaaaaagtaaaaggc
ggcttatctgcaggaagagtacaatctgtttcggttcgtttaattgtagaacgtgaacgc
gaaatacaagactttaaggcggaagcaagtttttccatagcggcagaattcacaaatgaa
gctggaaaagtagttaaagctaaattagctaaaaatttcactacacaagcagaagcaaaa
ctttttttagaaaaaaacagcgccgcaacatttaaagtggctgatttagaaaccaaaccc
acaaaaaaatcacctgccgcaccttttacaacttcgacattacaacaggaagcagcgaga
aaactatacttacccgtagggattaccatgcaaattgcacaacgtttgtatgaagccgga
ttaattacctatatgagaacagatagtgtaaatctttctcaagaagcaatggcagctgca
caagcggaaattatttcctattatggtagcgaatttagtaaaccaagaaatttttcaact
aaatcaaaaggggctcaagaagctcacgaagcgattcgccctacagacatgagtcgtcat
acagttgatctggatagagaccaagcgcgtttatatgatttgatttggaaacgaacaatt
gcttcccaaatgagtgatgcagccttagaacgcacaaatgttaaaatcaatgcatcttct
cataatgaacaatttgtagcaaccggtgaggtaatcaaatttgaaggttttcttaaagtg
tatttagaaggaaatgacgatgatgatgatgaacaagaaggcatgttaccagcgttaaga
ataaatgaacaattaataaataatttcatctctgcaaccgaacgtttcagtagacctcct
tcaagatatacagaagcttctttagtaaaaaaactagaagaattaggtattgggcgacct
tcaacgtatgctccaactatctcaaccataatcaacagaaattatgttgaaaaaggaagt
tttgaaggaacagaaagaaagtatacccaattaatattaaaaaatggcgaacttaaatct
gctcacttaaaagagacatttggttctgataaagggaaattagttcctacagatattgga
ggaatcgttaatgacttcttagttaaaaattttgaaaccattttagattacaatttcacc
gcaaaagtggagcaagattttgacgaaattgctgaaggaaaagaagattggagtaaaatg
atgcgtgatttttacaatcattttcacccgattgtatcaaatgttgaaaacaatgccgaa
agagaaacaggcgagcgtatattaggtaaagacccgaaaacaggaaaacaagtaagtgta
agattaggaaaatttggtccaatggcacaaataggagaagctgatgataccgaaaaacaa
tttgcaagcttacgggcagaccaaaacataagcaccattacactagaggaaacactgaat
ctttttttactacctaaaacattaggagaacttgacggggaaaccattgaagtaaacaat
ggtagatttggcccctatgtacgttttggcaaacaatttatttctcttccaaaaggcgaa
gacccactagacgtaacattagaacgcgctaaagaattaattggtgaaaagcaacaagcc
gatgcacctattggcacttataacaatctacccatacaaaaaggagtaggtcgttttgga
ccttttatcaagtggaatggcttatttattaatgtgaataaaaaatataattttgaccaa
ttatcacaaacagatttaaatgagttaattgaagaaaaaattcaaaaagacattgataaa
ataattcacgattggccagccgaaggcatacgagtagaaaaagcgcgatggggaaaatct
ataattctaaaaggcaaaatcaaaatagaattgagtaaagatgtagatgttgccaaatta
tctttggaacaaattaaagaaatactagataaaaaaacacctgcaaagaaagcaacagca
aaaaaaacaactactaaaaagaaataa
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