Flavobacterium nakdongensis: RF683_02515
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Entry
RF683_02515 CDS
T10681
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fnd Flavobacterium nakdongensis
Pathway
fnd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fnd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RF683_02515 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fnd03021
]
RF683_02515 (rpoC)
03400 DNA repair and recombination proteins [BR:
fnd03400
]
RF683_02515 (rpoC)
Enzymes [BR:
fnd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RF683_02515 (rpoC)
Transcription machinery [BR:
fnd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RF683_02515 (rpoC)
DNA repair and recombination proteins [BR:
fnd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RF683_02515 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WMW78335
UniProt:
A0ABY9RAR0
LinkDB
All DBs
Position
582079..586377
Genome browser
AA seq
1432 aa
AA seq
DB search
MTKLKDKNTVKRFNRITIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNKI
GYILGLPSKKLDMIIYYERYVVIQAGIAKGLDGETLNRLDFLTEEEYLNILDSLPMENQY
LDDSDPNKFIAKMGAECIMDLLSRIDLDELSYSLRHAANNETSKQRKTEALKRLNVVESF
RESNNNRENLPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQEAVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPEMKLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERLSTPEV
PVKGEGLTFYSVEEVHIALNEGRLDLNARVKVRAKDFNENGELVYKIIQTTAGRVLFNEV
VPEAAGYINEVLTKKSLRDIIGNILSATSVPETAAFLDNIKDMGYKFAFKGGLSFSLGDI
KVPEKKFELIADANGQVDAITMNYNMGLITNNERYNQVIDVWTSTNAQLTELAMKNIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAAGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIINSVDCGTLRGIEVSALKKNE
EIVETLGERILGRVALQDVINPLDSEVLVHAGEQITEAIVKQIEASPLEKVEVRSALTCE
AKKGICAKCYGRNLATGKMAQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGISEESS
IVARFAGKLEIEDLKTVKGEDNEGNTVDIVISRSTELKLVEPKTGIVLNTHNIPYGSTIF
VKDGDTLEKGATICKWDPYNGVIISEFTGKVGYEDIEQGQSFLVEIDEQTGFQEKVISEA
RNKKLIPTLHIYGKDGELIRSYNLPVGAHLMVDDGEKIKAGKVLVKIPRRSSKAGDITGG
LPRITELLEARNPSNPAVVSEIDGVVTFGKVKRGNREISIESKFGEVKKYLVKLSNQILV
QENDFVRAGMPLSDGAITPDDILRIQGPSAVQQYLVNEIQEVYRLQGVKINDKHFEVVIR
QMMRKVQIQDPGDTLFLEDQLAHTRDFIEENDKLYGMKVVEDAGDSATLKPGQIISPREL
RDENSLLKREDKNLVVARDVVTATATPVLQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKIDTLEGLKENVIVGHRIPAGTGMRDYDNILVGSKDEYSEMMAAKEEFNY
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaattaaaagataaaaataccgttaaaagatttaacagaatcacaataggttta
gcatcacctgagtcaattttagctgagtcaagaggtgaggttctaaaaccggaaacgatt
aactatcgtacgcacaaaccagagcgtgatggccttttctgtgaaagaatattcggacct
gtaaaagactatgaatgtgcttgtggaaaatataaaagaattcgctacaaaggaatcgtt
tgtgaccgttgtggggttgaagtaacagaaaagaaagtacgtagagatagagtaggacat
attaatttagttgtgcctatcgctcatatttggtatttccgttcacttccaaataaaatt
ggttatatattaggcttaccgtctaaaaaattagacatgattatctactacgaaagatat
gtagttattcaagcgggtattgctaaaggtttagatggtgaaacattaaatagattagat
ttcttaacagaagaagaatatctaaatattttggattctttaccaatggaaaaccaatat
ttagacgattcagatccaaataaattcatcgctaaaatgggtgctgaatgtattatggat
ttattgtctcgcattgatttagatgaattatcttattcattacgtcatgctgcaaacaat
gaaacgtctaaacaaagaaaaacagaagcattaaaacgtttaaatgttgtagaatcattc
cgtgagtctaacaataacagagaaaatcttccagaatggatgattctaaaagttatccca
gttattccacctgaattacgtccacttgtgccacttgatggaggacgttttgctacttca
gatttaaatgatttatacagaagagtaattatccgtaacaatcgtttaaaacgattaatg
gaaattaaagcccctgaagttatcttgcgtaatgaaaaacgtatgcttcaagaagcagta
gattcattatttgacaatacaagaaaagcatcagcggtaaaaacagaatcaaacagacca
ttaaaatctttatcagattcattaaaaggtaaacaaggacgtttccgtcaaaacttatta
ggtaaacgtgtagattattctgctcgttctgtaattgttgttggaccagaaatgaaattg
tttgaatgtggtttaccaaaagatatggctgcagaattgtacaaaccattcgttattcgt
aaattaatcgaaagaggaatcgttaaaacagttaagtcggctaagaaaattattgataaa
aaagagccagtagtatgggatattcttgaaaatgtaatcaaaggacatccagtattacta
aaccgtgctcctacacttcaccgtttaggtattcaagcattccagcctaagttaattgaa
ggaaaagcaatccagttacacccattagtatgtacggcgtttaatgccgatttcgatggt
gaccagatggccgttcacttaccattaggaccagaagcgatattagaagcgcaattatta
atgttagcttctcacaatatcttgaatcctgcaaatggtgcacctattacagtaccatct
caagacatggttcttgggttatactacatgacgaaagaacgtttgtcaacacctgaagtg
cctgttaaaggtgaagggttaacgttttattctgtagaagaagtacatattgctttaaat
gaaggaagacttgatttaaatgcaagagtaaaagtacgtgccaaagattttaatgaaaac
ggagaattagtatacaaaattattcaaactacagctggtagagtattatttaatgaagta
gtgcctgaagcagctggatacatcaatgaagtcttaactaaaaaatcgttaagagatatt
attggtaatattttatctgcaacttcagttcctgaaacggctgctttccttgataatatt
aaggatatgggatacaaatttgccttcaaaggtggattgtcattctcgttaggggatatc
aaagttccagaaaagaaatttgaattaattgctgatgcaaacggacaagtagacgcaatt
acgatgaactataacatgggtcttattacaaacaatgagcgttataatcaggtaattgac
gtgtggacttctacaaatgcacaattaacagaattagctatgaaaaacattagagaagac
caacaagggttcaactcggtgtatatgatgcttgattctggagcaaggggttctaaagaa
caaatccgtcagttaacaggtatgcgtggtttgatggctaagccaaaaaaatcaactgct
gcgggtggagaaattattgaaaatccaattctttctaactttaaagaaggattatcgatt
ttagaatactttatttctacgcacggtgcacgtaaaggtcttgccgataccgctcttaaa
actgccgatgcaggatatttaacaagaagattacatgacgtttctcaagatgttattatc
aattcagtagattgtggtacattaagaggtattgaagtttctgcgttaaagaaaaatgag
gaaatcgttgaaacgttaggtgaaagaattttaggtcgtgtagcgttacaagatgtaatc
aatccattagattctgaagtattggttcatgcaggtgagcaaattacagaagctattgta
aaacaaatagaagcatcaccattagaaaaagttgaagtacgttcggccttaacttgtgaa
gctaaaaaaggaatctgtgcaaaatgttacggtagaaacttagctacgggtaaaatggcc
caaaaaggggaagcagttggtgttattgcagcacaatcaattggtgaaccaggaactcag
ttaacccttcgtacattccacgttggtggggttgcaggaggtatatctgaagagtctagt
attgtagcacgttttgcaggtaaattagaaatagaagaccttaaaacagttaaaggggaa
gataacgaaggaaatacagttgatattgtaatttctcgttctacagaattaaaattagta
gaaccaaaaacaggtatcgtcttaaatacacacaacattccttatggatctaccattttt
gttaaagacggagacacgttagaaaaaggtgctacgatctgtaaatgggacccatataat
ggggtaattatttctgaatttacaggtaaagtagggtacgaagatattgaacaaggacaa
tcgttcttagttgaaattgacgaacaaacaggtttccaagaaaaagtaatttcagaagca
agaaataaaaaattaattccaaccttacatatttatggtaaagatggtgaattaattaga
tcgtataacttaccagtaggagcgcaccttatggtagatgacggagaaaaaattaaagcg
ggtaaagttttagttaaaattccacgtcgttcttctaaagcaggcgatattaccggaggt
ttaccaagaattacagagttgttagaagcacgtaatccttcaaacccagcggtagtttct
gaaattgatggtgtagttacttttggaaaagtaaaaagaggaaatagagaaatttctatt
gaatctaaatttggtgaagtgaagaaatatttagtaaaactttctaaccaaatcttagtt
caagaaaatgactttgtaagagcaggtatgccattgtctgatggagctattacaccagat
gatatcttaagaattcaaggaccttctgctgtgcaacagtacttggtaaatgaaattcaa
gaagtatatcgtttacaaggggtaaaaatcaatgacaaacacttcgaagtagtgattcgt
caaatgatgcgaaaagttcaaattcaagatccaggtgataccttattcttagaagatcaa
ttagctcatacacgtgattttattgaagaaaacgacaagttgtatggtatgaaagtagta
gaagacgcaggtgattcagctacattaaaaccaggacaaattatttctcctagagaatta
agagacgaaaattctttattaaaacgtgaagataaaaatttagtagtagcaagagatgta
gttacggcaacggcaactccagtacttcaaggtattactagagcatcgttacaaactaaa
tcatttatttcagcggcttcgttccaagaaacaactaaagtattaaatgaagcagcagta
gctggtaaaatagatacgttagaaggcttaaaagaaaatgtaattgtaggtcacagaatc
cctgctggtacaggtatgagagactacgacaacattcttgtaggttcaaaagacgagtac
agcgaaatgatggctgcgaaagaagaatttaattattaa
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integrated database retrieval system
