Flavobacterium nakdongensis: RF683_03935
Help
Entry
RF683_03935 CDS
T10681
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fnd Flavobacterium nakdongensis
Pathway
fnd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fnd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RF683_03935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fnd03019
]
RF683_03935
Enzymes [BR:
fnd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RF683_03935
Messenger RNA biogenesis [BR:
fnd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RF683_03935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_19
Flavi_DEAD
Cas3-like_C_2
CMS1
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WMW78601
UniProt:
A0ABY9RCB6
LinkDB
All DBs
Position
895559..896812
Genome browser
AA seq
417 aa
AA seq
DB search
MTFQDLNLHRNIVEVLKEENYIAPTPIQEQAIPIILEGHDLVGCAQTGTGKTAAFAIPIL
NYLHPIVGSKNKRKTLRTLILAPTRELAHQILDSFNTYGKYMTTKAMVIYGGVNQVPQVQ
QLKEGVDVLIATPGRLLDLHKQGHIDLNHLHHVVIDEADQMLDMGFINDVKKIIKLTPEN
RQTLLFSATMPVAIRELADAFLTKPKFVSVTPVSSTAEKVNQKVYFVQKEDKRKLLIHLL
QNENYANALVFVRTKHSADNVVKALKKHEISAAAIHGDKSQSARLRVLDEFKTKQISILV
ATDIAARGIDIDLLPYVINFDIPNIPETYVHRIGRTGRAGNEGLAISFCGKDELAYWKDI
EKLTRQQIKVVKDNPFPFREFTEEEKAAKQNDRRNPRKQNQQKPNGSNPSKKKKRRY
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgacctttcaagatttaaatctacaccgcaatattgttgaagtacttaaagaagaaaac
tacattgcacccacacccatacaagaacaagctattccaattattttagaaggacacgat
ttagtaggttgtgcgcaaacgggcacaggaaaaacggctgcatttgccattccaatttta
aattatttacaccctattgttgggtctaaaaataaacgtaagacactacgaacccttata
ttagcaccaacccgtgaattagcacatcaaattttggatagttttaatacctacggtaag
tacatgacaacgaaagcgatggtaatttatggtggtgtaaatcaagtgcctcaggtgcaa
caattaaaagaaggggtagatgtattgattgctactcccggccgattacttgatttacat
aaacaagggcatatcgatttaaatcatttgcatcatgtggttattgatgaggcagaccaa
atgctagatatggggtttatcaatgatgtaaaaaaaataatcaaattaactccagaaaat
agacaaacacttttgttttcagctacgatgccagtggctataagagaattagcagatgca
tttttgactaaaccaaaatttgtttcggtaacgcctgtttcaagtacagctgaaaaagta
aatcagaaagtatattttgttcaaaaggaagataaaagaaaattattaattcatttgttg
caaaatgaaaactatgcgaatgctttggtttttgttcgtaccaaacatagtgcagacaat
gtggtaaaagcacttaaaaagcatgaaatttcagcggctgccattcatggcgataaatcg
caatcggctcgattacgagttttagatgaatttaaaaccaaacaaatttctatattagtg
gctaccgatattgcggctagaggaattgatattgatttattgccttatgtgattaatttt
gatattccaaatattcctgaaacctatgtgcatcgtatcggaagaacgggtagagccgga
aatgaaggtttggccatttctttttgtggaaaagacgaattggcatattggaaagacatt
gaaaaacttacccgtcagcaaataaaagtcgttaaagacaatccgtttccatttagagaa
tttacggaagaagaaaaagcagcgaaacaaaacgacagaagaaatcctagaaagcaaaat
caacaaaaacctaatggatcaaatccttccaagaaaaaaaagagaaggtattag
DBGET
integrated database retrieval system
