KEGG   Flavobacterium nakdongensis: RF683_04300
Entry
RF683_04300       CDS       T10681                                 
Name
(GenBank) D-alanine--D-alanine ligase
  KO
K01921  D-alanine-D-alanine ligase [EC:6.3.2.4]
Organism
fnd  Flavobacterium nakdongensis
Pathway
fnd00470  D-Amino acid metabolism
fnd00550  Peptidoglycan biosynthesis
fnd01100  Metabolic pathways
fnd01502  Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:fnd00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    RF683_04300
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    RF683_04300
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01502 Vancomycin resistance
    RF683_04300
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:fnd01011]
    RF683_04300
Enzymes [BR:fnd01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.4  D-alanine---D-alanine ligase
     RF683_04300
Peptidoglycan biosynthesis and degradation proteins [BR:fnd01011]
 Precursor biosynthesis
  Amino acid ligase
   RF683_04300
SSDB
Motif
Pfam: Dala_Dala_lig_C Dala_Dala_lig_N ATP-grasp_3 ATP-grasp_4 ATP-grasp CPSase_L_D2 DUF7738 GARS_A ATPgrasp_ST ATPgrasp_Ter
Other DBs
NCBI-ProteinID: WMW78670
UniProt: A0ABY9RED4
LinkDB
Position
complement(970711..971700)
AA seq 329 aa
MRNIAVVMGGYSDESVISLRSGQLILNHLDKTKYHIYEVHIVSDSWNVLLNDKKYDINRA
DFSVTIDDQKITFDVVVNTIHGTPGEDGHMQAYWELVNLPYTGCNFYQSSLTFNKRDTLS
VLSKFNIPRAKSIYLTEGMPIHVDDVMAELGLPFFVKPNQSGSSLGVSMVQNPSEFDKAL
AFAFAEDKDILLESYLKGTEISVGVLKYKGVTTVLGITEIIPKNAFFDYEAKYLGKSEEI
TPARISVEVEQLVKETAIKVYDSLGMQGFSRTDFIIMDGIPHFIEINTNPGLSPQSIFPQ
QAAFAGMNFADLLDNEIKLALDRKPIWEK
NT seq 990 nt   +upstreamnt  +downstreamnt
atgaggaacatagccgttgtaatgggcggatattcagatgaatcagtcatttctttgaga
agtggccaattaatcttaaatcaccttgataaaaccaaataccatatttatgaagtacat
atagtatccgattcttggaatgtgcttttaaatgataaaaaatacgacataaatcgtgcc
gatttttcagttactattgatgaccaaaaaataacttttgatgtagtagtaaacacgatt
catggtacacctggcgaagacggacacatgcaagcctattgggaacttgtaaatttaccc
tatacaggttgcaacttctatcagagcagtctaacgtttaataaacgcgatacattatcc
gtactaagtaaatttaatattccacgagcaaaatcgatttatttaacagaaggcatgcct
attcatgttgatgatgtaatggcagaattgggcttacctttttttgtgaaaccaaatcaa
tctgggagtagtttaggtgtatctatggtacaaaaccctagcgaatttgataaagcatta
gcttttgcttttgcggaagataaagacattttattggaatcttatttaaaaggaaccgaa
atttctgttggtgttttaaaatacaaaggcgttacaactgtattaggaattacagaaata
atacctaaaaatgctttttttgattatgaagcgaaatatttaggaaaatctgaagaaata
actcctgcacgtatttcagttgaagtagaacaacttgtcaaggaaacggctattaaagta
tatgattcattagggatgcaaggattttctagaaccgatttcatcattatggatggtatt
cctcattttattgaaatcaataccaatcctgggctaagtccacaaagtatatttccgcaa
caagcggcatttgctggtatgaattttgccgatttattagataatgaaataaaattagct
ttggacagaaaacccatttgggaaaaataa

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