Flavobacterium nakdongensis: RF683_06160
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Entry
RF683_06160 CDS
T10681
Name
(GenBank) 3'-5' exonuclease
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fnd Flavobacterium nakdongensis
Pathway
fnd03420
Nucleotide excision repair
fnd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fnd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RF683_06160
03430 Mismatch repair
RF683_06160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fnd03400
]
RF683_06160
Enzymes [BR:
fnd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RF683_06160
DNA repair and recombination proteins [BR:
fnd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RF683_06160
MMR (mismatch excision repair)
Other MMR factors
RF683_06160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
ResIII
DUF1908
Motif
Other DBs
NCBI-ProteinID:
WMW77080
LinkDB
All DBs
Position
complement(1377089..1379422)
Genome browser
AA seq
777 aa
AA seq
DB search
MQKYIDQLNEAQRAPVLQKDGPMIVIAGAGSGKTRVLTMRIAYLMSLGVDAFNILALTFT
NKAAREMKNRIASIVGSNEAKNLWMGTFHSVFAKILRIEAERLGYPSNFTIYDTQDSVRL
LGQIIKEMQLDKDVYKPKQILGRISQYKNSLITVRAYFNNPELQEADAMSKKPRMGEIYQ
NYVDRCFKSGAMDFDDLLLKTNELLNRFPDVLAKYQDRFRYILVDEYQDTNHSQYLIVKA
LSDRFQNICVVGDDAQSIYAFRGANINNILNFQKDYDGVQTYRLEQNYRSSKNIVEAANN
VIDKNKTKLDKIVWTSNDDGPKIKVHRSVTDGEEGRFVAATIFEQKMQNQLPNNHFAILY
RTNAQSRAMEDALRKRDIPYRIYGGLSFYQRKEIKDVLAYLRLVINPKDEEALVRVINYP
ARGIGDTTVEKLTVAANHYKRSIFEVMQHIDKIDLKLNAGTKQRLQDFVTMIQSFQVINE
NQDAFYLTDHVTKKTGLVQELKKDGTPEGIAKIENIEELLNGIKDFTEGQKEIDGARGSL
SEFLEDVALATDLDKDTGDDDRVALMTIHLAKGLEFPHVFIVGMEEDLFPSAMSLNTRSE
LEEERRLFYVALTRAEHQAYLTYAQSRYRWGKLVDSEPSRFIEEIEEKYLDFLNPMDTSY
RYKPMMDIDIFGEIDKSKLRLSKPIGGTPPAYISSQEPISSASIRRLKPMSSSGSNAKSS
SVDSNLVIGNIVMHERFGKGEIVNLEGVGADRKAEIRFDVGGLKKLLLRFAKLNVIG
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaatacattgatcagttaaatgaggcgcagcgcgctcctgttctgcaaaaagac
ggtcctatgattgtcattgcaggagcaggttcaggcaaaacacgtgtgcttaccatgcgt
atagcttatttaatgagtttaggtgttgatgcatttaatattttggctttaacatttacc
aataaagcagcacgagaaatgaaaaatcgtattgcaagcattgtggggagtaatgaagct
aaaaatttatggatgggaacttttcactctgtttttgcaaaaatattgcgtattgaagca
gaacgcttaggctatccttcaaattttaccatatatgacacacaagattcagtacgttta
ttagggcaaatcataaaagaaatgcaattagataaagatgtctataagccaaagcaaatt
ctaggtcgcatttctcaatataaaaattcattaataacggttcgcgcttacttcaataac
cctgaattacaagaggctgatgccatgagtaaaaagccgcgtatgggcgaaatttatcaa
aattatgtagatcgctgttttaaatctggggctatggattttgatgatttgcttttaaaa
actaatgaactattaaatcgttttccagacgtattagccaaatatcaagatcgttttaga
tatattttagtagatgagtaccaagacaccaatcattcacagtatttaatagtaaaagcg
ttatcggatcgttttcaaaatatatgcgtagtaggcgatgatgcacaaagtatttatgct
tttagaggagcaaacatcaataatatcttaaattttcaaaaagattatgatggtgtacaa
acctatcgattagaacaaaattaccgttcaagtaaaaatattgtagaagctgccaataat
gttattgataaaaacaaaacgaagttagataaaatagtttggacttcaaatgatgatgga
ccaaaaattaaagtacatcgtagtgtaacagatggtgaagaaggaagatttgtcgcagct
accatatttgaacaaaaaatgcaaaatcaattgccgaacaatcattttgctattttatat
cgtaccaatgcacaatcaagagccatggaagatgcgttgcgaaagagagatatcccttat
cgtatttatggcggtttatctttttaccagcgtaaagaaatcaaagatgtcttagcttat
ttaagattagtcattaatccaaaagatgaagaagctttagttcgtgtcattaattacccc
gcccgtggaattggagatacgactgtcgaaaaattaaccgtagcagcaaatcattataag
cgttctatttttgaagtcatgcaacatattgacaaaatagacctaaaattaaacgcagga
acgaaacaacgattacaagactttgttactatgattcaaagttttcaggtaattaatgaa
aatcaagatgcgttttatttgacagatcatgttactaaaaaaacaggactagttcaagaa
ttaaaaaaagacggcacacctgaaggaattgctaaaattgagaatattgaagagttgcta
aatggtataaaagattttaccgaaggacaaaaggaaatagacggcgccagaggttctttg
tccgaatttttagaagatgtcgctttagcaacagatttagacaaagacacaggtgatgac
gatagggtagctttaatgacgattcacttggcaaaagggttagaatttcctcatgtgttt
attgtaggcatggaagaagatctttttccgagtgcaatgagtttaaatacaagaagtgaa
ttggaagaggagcgaagattgttttatgtagcgctaacccgtgccgaacatcaggcctat
ttaacctatgcacaatcaagataccgatggggtaaattagtagacagtgagccttctcga
ttcattgaggaaatagaggaaaagtatttagacttcttgaaccctatggatacatcatat
cgttataagccgatgatggatattgatattttcggagaaattgacaaatcaaaattgcgt
ttatctaaacctattggcggtacaccaccagcctatatttcaagtcaagaacctatttct
tctgcgagtattagaaggttgaaaccaatgagtagtagtggttctaatgcaaaaagcagt
tcagtggatagtaatttagttattggaaacattgtgatgcatgaacgttttggaaaaggt
gaaatagtgaatttagaaggtgtaggcgctgatagaaaagcagaaattcgttttgatgta
ggaggcttgaaaaagttgttattgcgatttgcaaagttaaatgttattgggtaa
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