Flavobacterium nakdongensis: RF683_07300
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Entry
RF683_07300 CDS
T10681
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fnd Flavobacterium nakdongensis
Pathway
fnd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fnd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RF683_07300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fnd03019
]
RF683_07300
03009 Ribosome biogenesis [BR:
fnd03009
]
RF683_07300
Enzymes [BR:
fnd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RF683_07300
Messenger RNA biogenesis [BR:
fnd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RF683_07300
Ribosome biogenesis [BR:
fnd03009
]
Prokaryotic type
rRNA helicases
RF683_07300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WMW77296
LinkDB
All DBs
Position
complement(1639138..1641009)
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AA seq
623 aa
AA seq
DB search
MNKFEQLGLNESLLKAIGDLGFETPSEVQEKAIPLLLEEDTDIVALAQTGTGKTAAFGFP
LIQKIDPFNRQTQALILSPTRELCLQITNEIKLYSKYIDGLHTVAVYGGASINDQAREVK
RGAQVIVATPGRMQDMINRGMVNIKNISICVLDEADEMLNMGFYEDITSILSDTPKDKNT
WLFSATMPQEVARIAKEFMKNPQEITVGHKNSSSANISHEYYLVNARDRYEGLKRLADAN
PDIFSVIFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNITHVINYQLPDEIETYTHRSGRTGRAGKSGTSFVIITKSEIRKIHSIERI
IKTKFEEKAIPSGMEICEIQLLHLANKIKDTETDHTIDTYLPSIMDLLQDIPKEDLIKKV
VSIEFNRFLNYYKKSKDLTQIPGKAGEVPTSGAVRYFINIGSRDDYDWMTLKDFLRDTLD
VGRDDIFKVDVKEGFSFFNTDAELADKVMSILNEIKVNGRKINVEISKNDGGKNQGRRDH
GGRDRKRDGGGFSGRREGGNREGGFRREGGAPRSDSRPRREGGSERKFESRDGARRTEGR
SERRTTTSDSRSMFDKAKRSRRS
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgagcaattagggttaaacgaatcgttgttaaaagcaataggtgattta
ggattcgaaaccccgtcagaagtacaggagaaggcaatcccactattattggaagaagac
acagatatcgtcgctcttgcccaaacaggaacaggaaaaaccgcagcttttggttttcca
ctaatccaaaaaattgatccattcaacagacaaacacaagcgttaattctttctccaaca
agagaattgtgtttgcaaattacaaacgaaatcaaattatactctaagtacatcgacggt
cttcatactgttgcagtttacggtggcgcgagtatcaatgatcaagcgcgtgaggttaaa
agaggggcacaagttattgtggctacaccgggtagaatgcaagatatgattaacagaggc
atggtgaatattaaaaacatcagcatctgtgttcttgatgaggcagacgaaatgttaaat
atgggtttctatgaagatattacaagtatcttatcagacacgccaaaagacaaaaacaca
tggttattctcggcaacaatgccgcaagaagtagcaagaatcgctaaagaatttatgaaa
aacccgcaagaaattacggtaggtcataaaaactctagttcagcaaacatttctcacgaa
tattatttagttaatgcacgtgatagatacgagggattaaaaagattagcggatgcgaat
ccagatattttctccgtaattttttgtagaacaaaaagagatacacaagcggttgcagaa
aaattaattgaagacggatacaatgctgctgcattacacggagatttatcgcaagcacaa
cgtgatggcgtaatgaaatcgtttcgtggaagacaaattcaaatgcttgtggctacagac
gttgccgctcgtggaattgacgtagacaacattacgcacgtaatcaattatcaattacca
gacgaaattgaaacttatacacaccgttcaggtcgtacaggtcgtgccggaaaatcaggt
acttcgtttgtaattattacaaaaagtgaaatcagaaaaattcactcaatcgagagaatt
atcaaaacgaaattcgaagaaaaagcgattccttctggaatggaaatctgcgaaattcag
ttgttacacttagctaataaaattaaagatacagaaacagatcatactattgatacctat
ttgccttctattatggatttgttacaagacattcctaaagaagacttaattaaaaaagta
gtttcaatagaatttaatcgtttcttaaactattataaaaaatcaaaagatttaactcaa
atcccaggtaaagcaggagaagttcctacgtcgggtgcagttagatactttatcaatatt
ggttcaagagatgattatgattggatgacattaaaagattttttaagagatacacttgat
gtaggacgtgatgatatctttaaagtggatgtaaaagaaggtttttctttctttaataca
gatgcagaattagctgacaaagtaatgtctattttgaatgaaatcaaagttaatggaaga
aagattaacgttgaaatttctaaaaatgacggaggcaaaaaccaaggaagaagagaccat
ggcggtagagatcgtaaacgtgatggtggaggattttctggcagacgtgaaggtggaaat
cgtgaaggcggatttagacgtgaaggtggcgctccaagatcagatagtagaccaagacgt
gagggtggaagcgaaagaaaatttgaatcacgagatggcgcaagaagaactgaaggacgt
tctgaaagaagaacaacaacaagtgattctcgttctatgtttgataaagcaaaacgttca
agaagaagttaa
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