Fusobacterium necrophorum subsp. funduliforme: BSQ88_00605
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Entry
BSQ88_00605 CDS
T06168
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fnf
Fusobacterium necrophorum subsp. funduliforme
Pathway
fnf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fnf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BSQ88_00605 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fnf03021
]
BSQ88_00605 (rpoC)
03400 DNA repair and recombination proteins [BR:
fnf03400
]
BSQ88_00605 (rpoC)
Enzymes [BR:
fnf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BSQ88_00605 (rpoC)
Transcription machinery [BR:
fnf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BSQ88_00605 (rpoC)
DNA repair and recombination proteins [BR:
fnf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BSQ88_00605 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AYV92265
UniProt:
A0A170MVI6
LinkDB
All DBs
Position
100666..104634
Genome browser
AA seq
1322 aa
AA seq
DB search
MGIRNFEKIKIKLASPEKIEEWSYGEVTKPETINYRTLNPEKDGLFCEKIFGPTKDWECA
CGKYKRMRYKGLICEKCEVEVTKSKVRRERMGHIALAAPVSHIWYSKGTPNKMSLIIGLS
PKELESVLYFARYIVTESEEDSLEIGKIITEKEYKLFKQLYGNKFEAYMGAEAILKLLER
INLEELRIELEEELEEVSSAQKRKKIVKRLKIVRDFIASGNKPEWMILKNVPVIPADLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLEIRAPEIVVKNEKRMLQEAVDALIDNGR
RGKPVVAQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPSLKMNQCGIPKK
MALELYKPFIMRELVKRELATNIKTAKKLVEEADDKVWDVIEDVIQDHPVLLNRAPTLHR
LSIQAFEPVLIEGKAIRLHPLVCSAFNADFDGDQMAVHLMLSPEAIMEAKLLMLAPNNII
APSSGEPIAVPSQDMVMGCYYMTEKKKGAKGEGKVFSNIEQLLTAYQNQVIDTHALVKVR
VNGEMVETTAGLVMFNEILPIQDRNYQRTIGKKELKNLIAYLYDEHGFTETADLINKLKN
FGYHYSTLAGISVGVEDLVIPEEKKHLLAAADKQVEEIDADYKSGKIINEERYRKTIEVW
SKTTDAVTKAMMDGLDKFNPVYMMANSGARGNTNQMRQLAGMRGNMADTQGRIIETPIKA
NFREGLTVLEFFISSHGARKGLADTALRTADSGYLTRRLVDISHEVIVNAEDCGTMQGIE
VGDLISGGKVIEKLAERIRGRVLAEDLIHEGEILATRNTMIGKELLREIEEKGIKKVKIR
SPLTCALEKGVCKKCYGMDLSNLKEILLGEAVGVVAAQSIGEPGTQLTMRTFHTGGVASA
SAAITQIKSENGGRISFRDIHTLNLNGEEIVVSQAGKVIVADNEYEVSSGSTLRVKEGDI
IEEGTVLVTFDPYHIPLIAAQDGKVEYRELTPKKTYDEKYDVWQSLVVKAMDSGDVNPRV
HILDKEGKKLGTYNIPYGAYMMVEDGAMVKKGDILAKIMKIGEGSKDITGGLPRVQELFE
ARNPKGKAMLTEIDGRVEINNRKKKGMRVVTVKALDDSGDQREYLVPVGERLIVTDGLKV
KAGDKITEGAISPFDVLNIKGLVAAEQFILESVQQVYRDQGVGVNDKHIEIIVKQMFKKV
KIVDSGASLFLEDEVVEKRLVDLENKELAEKGKALIQYEPIIQGITKAAVNTGSFISAAS
FQETTKVLSNAAIEGKVDYLEGLKENVIIGKKIPAGTGFSAYKNVAMKVQEEFGTELEAV
EE
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atgggaatcagaaattttgaaaaaattaaaattaaattggcatctcctgaaaaaattgaa
gaatggtcatatggggaagtaacgaagccggaaaccataaattatagaacgttgaatccg
gaaaaagacggattgttctgcgaaaaaatctttggaccgacaaaagattgggaatgtgca
tgtggaaagtacaagagaatgcgatacaaaggtttgatttgtgaaaaatgtgaagtggaa
gtgacaaaatcgaaagtcagaagagaaagaatggggcatattgctttggcagcccctgtt
tcgcacatttggtattccaaaggaactccaaataaaatgtctttgattatcggcttatct
ccaaaagaattggaatctgtattgtattttgcgagatacattgttacggaaagcgaggaa
gacagcttagaaatcggaaaaatcatcacggaaaaagaatacaagttgtttaaacagttg
tatggaaataagtttgaagcttacatgggtgcggaagcgattttaaaattgttggaacga
atcaatttagaagaattgagaattgagttggaagaggaactggaagaagtttcttccgct
caaaaacggaagaaaattgtaaaacgtttgaaaattgttcgagattttattgcttccgga
aataaaccggaatggatgatcttaaagaatgttcccgtgattcccgcagatttacgtcct
atggtacaattggacggaggaagatttgcgacttcggatttgaatgatttgtatcgaaga
gtcatcaatcgaaacaatcgtttgaaaaaattattggaaattcgagcccctgaaatcgtt
gtaaaaaatgaaaaaagaatgttacaggaagctgtagacgccttgattgacaatggtcga
agaggaaagccggtggtagctcaaaacaacagagaattgaaatccttgtccgatatgttg
aaaggaaaacaaggacgtttccgacaaaatttgttgggaaaacgggtagactattcagca
cggtctgttatcgtggtaggaccgtctttgaagatgaatcaatgtggaattcctaagaaa
atggctttggaattgtacaaaccgtttattatgagagaattggtaaaacgggaattggca
accaatattaaaacagcgaaaaaattggttgaagaagctgatgacaaggtttgggatgtc
attgaagatgtcatccaggatcacccggttttattgaacagagctccgactttgcataga
ttgtcgattcaagcatttgaaccggttttgattgaaggaaaggcaattcgactgcatcct
ttggtttgttccgccttcaacgccgacttcgacggagaccaaatggcagtgcatttaatg
ttatctccggaagctatcatggaagcaaaattattaatgctggcaccgaataatatcatt
gctccgtccagcggggaaccgattgcagtcccttctcaagatatggtcatgggatgttat
tatatgacagaaaagaaaaagggagccaagggagaagggaaggtcttttccaatattgag
cagttattgacggcttatcaaaatcaagtcattgatactcatgctcttgtcaaagtcaga
gttaatggagaaatggtagaaacgactgcaggattggtaatgttcaatgaaattttaccg
atacaagatagaaactatcaaaggacaatcggaaagaaagaattgaaaaatttgatcgca
tacttgtatgatgaacatggtttcacagaaacggcggatttaatcaacaagttaaagaat
ttcggttaccattattccactttggcaggaatttccgtaggagtcgaagatttggtgatt
ccggaagagaagaaacatttattggcggctgcggacaaacaggtggaagaaatcgatgcc
gattataaatccggaaagattatcaatgaagaacgatatcgaaaaacaattgaagtttgg
tctaaaacaacagatgccgttacaaaagcaatgatggacggattggataaatttaatccg
gtatatatgatggcgaattcaggagcacggggaaatacaaaccaaatgcgtcaattagcc
ggaatgagaggaaatatggcggatacgcaagggcgtatcatcgaaactccaatcaaggca
aatttccgagaaggattgaccgttttggaattctttatttcttctcacggagcgagaaag
ggattggccgataccgcacttcgaactgccgattcaggatacttaacgagaagattggtg
gatatttctcacgaagtgattgtcaatgcggaagattgcggaacgatgcaaggaattgaa
gtaggagacttgatttccggaggaaaagtcattgaaaaattggcggaaagaatcagagga
agagtcttggcggaggacctaatccacgagggagaaatcttagccactcgaaatacgatg
attggaaaagaactgcttcgagaaattgaggaaaaaggaatcaaaaaagtaaaaattcga
tctcctttgacttgtgctttggaaaaaggagtctgcaaaaaatgttacggtatggacttg
tccaacttaaaagaaattttattaggagaagccgtgggagttgttgcagcacagtctatc
ggagaaccgggaacacaacttaccatgagaaccttccataccggaggggtagcaagcgct
tcggcagcaattacacaaatcaaatcggaaaatggaggacgaatttctttccgagatatt
cataccttgaacttgaatggagaagaaattgttgtaagtcaggcaggaaaagtcattgta
gcagacaatgaatatgaagtttcttcgggatccactctacgagtgaaagagggagacatc
attgaagagggaacggtattggtaacctttgatccatatcacattccattgattgcagct
caagacggaaaagtcgaatatcgagaattgacaccgaagaagacctatgatgaaaaatat
gatgtttggcaatccttggtggttaaagccatggacagtggagatgttaaccctcgagtt
catattttagacaaagaggggaaaaagttaggaacttacaacattccttatggagcctac
atgatggtggaagacggagctatggtcaaaaagggagatatccttgcaaagattatgaaa
atcggagagggatccaaggatattacaggaggtcttccaagagtacaagaattgtttgag
gcaagaaatccaaaaggaaaagcaatgcttacggaaattgacggaagagtggaaatcaat
aatcgtaagaagaaaggaatgcgagtcgttacggtaaaagctctggatgattccggagac
caacgggaatatttggttcctgtgggagaacgtctgattgttacggacggattgaaggta
aaagcaggagataagattaccgaaggagcaatttctccttttgacgtattaaatattaaa
ggtttggtcgcagcggaacagtttatcttggaatcggtacaacaagtatatcgggatcaa
ggggtaggcgtgaacgacaaacatatagaaatcattgtaaaacaaatgtttaagaaggta
aaaatcgttgattccggagcctctttgttcctggaagatgaagtggtggaaaagagattg
gtggacttggaaaataaagaattggcagaaaaaggaaaggccttaattcaatacgagcca
attattcaaggaattaccaaagcggctgtcaatacgggaagtttcatttccgcagcctct
ttccaagaaacgacaaaagttctttccaatgcggcaattgaaggaaaggttgactatttg
gaaggattgaaagaaaatgtcattatcggaaagaaaattccggcaggaacaggattctca
gcctataaaaatgtagcgatgaaagtacaggaagaattcgggacagaattggaagcggta
gaagaatag
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integrated database retrieval system
