Fusobacterium necrophorum subsp. funduliforme: BSQ88_03070
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Entry
BSQ88_03070 CDS
T06168
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fnf
Fusobacterium necrophorum subsp. funduliforme
Pathway
fnf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fnf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSQ88_03070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fnf03019
]
BSQ88_03070
03009 Ribosome biogenesis [BR:
fnf03009
]
BSQ88_03070
Enzymes [BR:
fnf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSQ88_03070
Messenger RNA biogenesis [BR:
fnf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSQ88_03070
Ribosome biogenesis [BR:
fnf03009
]
Prokaryotic type
rRNA helicases
BSQ88_03070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
NDK
SH2_1
2H-SAK
Motif
Other DBs
NCBI-ProteinID:
AYV92718
UniProt:
A0A162IWV4
LinkDB
All DBs
Position
613424..615010
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AA seq
528 aa
AA seq
DB search
MEKKEVLKEFRDLGIGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKT
AAFALPILENIEHQDKIQGIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQR
KLLRTGADIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNE
DKRMLFFSATMPNEILKVAKKHMKDYEILAVKARELTTDLTDQIYFEVNERDKFEALCRI
IDLAEDFYGIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKARKINIL
VATDVAARGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQ
IQRIVKTEIRKEQVPEVKDVIQAKKFQIQKDIDEILLEGEYDKFKKLAQDLLKKEEAENI
VASLLKLAYEDVLDESNYNEISSTKTVGGGKARLFVALGRKDGMTAKKLVEKVMKVAKVQ
DKKIRNVEVYEAFSFITVPFKEAEIIIESFKARQKGKKPLIEKAKSQK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaaaagaagtattgaaggagtttagagacttaggtattggagaaaaattgtta
aaagcattatctaagaaaggatatgaaactccaactccaattcaaagtttaacaattccg
gcgttgttaacaggagaaaaggatattattggacaggcacaaacaggaacaggaaagacg
gcagcttttgctcttcctattttagagaatatagaacatcaggataaaattcaagggatc
gtattgactcccacgagagaattggccttacaagtggcggaggaaatgaatagtctggga
agttccaaaaaaattaagattattccggtctacgggggacaatccattgatattcaaaga
aagttgcttcgaacaggagcggatattattgtaggaactcccggaagagtgattgatttt
attgagagaaagtttttgagactacaagatttgaaatatttcatattggacgaagcggat
gaaatgttgaatatgggatttttggaagaggtggaaaaaattctggaagccaccaatgag
gataagagaatgttatttttctctgcaaccatgccgaatgaaattttaaaagtagcgaaa
aaacatatgaaagactatgagattttagcggtaaaggcgagagagttaacaacggattta
acggatcaaatttattttgaagtcaatgaacgagataagtttgaagctctttgcagaatt
atcgacttggcagaggatttttacggaattgttttctgtcgaaccaaaacggatgtcaat
gaagtggtaggaagattaaatgacagaggatacgatgccgaaggactgcatggagatatt
ggacaaaattaccgagaagtgacattgaaacgatttaaagccagaaaaattaacatttta
gtggcaactgatgtggcggctcggggaattgacgtcaatgatttgagtcatgttatcaac
tatgccattccacaggaagctgaaagttatgtccaccgaatcggaagaaccggaagagcc
ggaaaagagggaactgccattactttcattactccacaggaatatagaagattattgcaa
attcaaagaattgtgaaaacggaaattcgaaaggaacaagttccggaagtgaaagatgtc
attcaagcaaaaaaatttcaaattcaaaaggatattgatgaaattttgctggagggggaa
tacgacaaatttaaaaaactggctcaagatttattgaagaaagaggaggcggaaaacatt
gtggcctctctattaaaacttgcttatgaagatgttttggatgaaagcaactacaatgaa
atttcttccacaaaaacagtaggaggcggaaaggcaagactttttgtagcattgggtaga
aaagacggaatgacggcgaaaaaattagtggaaaaagtgatgaaggtggcaaaggtacag
gataaaaaaattcgaaatgtcgaagtgtacgaagccttttctttcattaccgtacctttt
aaagaagcggaaattattatcgaaagctttaaagccagacaaaaaggaaagaaaccattg
atagaaaaagcaaaatcacaaaaataa
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