Fusobacterium necrophorum subsp. funduliforme: BSQ88_04665
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Entry
BSQ88_04665 CDS
T06168
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fnf
Fusobacterium necrophorum subsp. funduliforme
Pathway
fnf03420
Nucleotide excision repair
fnf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fnf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSQ88_04665
03430 Mismatch repair
BSQ88_04665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fnf03400
]
BSQ88_04665
Enzymes [BR:
fnf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSQ88_04665
DNA repair and recombination proteins [BR:
fnf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BSQ88_04665
MMR (mismatch excision repair)
Other MMR factors
BSQ88_04665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
PDDEXK_1
UvrD_C
AAA_19
Cas_Cas4
UvrD_C_2
AAA_22
AAA_11
AAA_30
Dna2
AAA_12
DEAD
Motif
Other DBs
NCBI-ProteinID:
AYV93000
UniProt:
A0A161QWV9
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All DBs
Position
complement(954391..957096)
Genome browser
AA seq
901 aa
AA seq
DB search
MLDKNQQKVVQYTKGPLLVIAGPGSGKTKTLVERSVHLLAEKKIEPSQILLSTFTEKAAR
ELRMRIQKALQEKGVSVSIEEMYLGTMHSIWLRILEEYITYSHYENGIEVLDEEEEKFFL
YSQLRQFKQLNFYMEFFEREHSYGDWAQSRLLQSIFSKIQEEAVDIPSIRSYQEEIQFLK
AAYELYQSLLRKENKISFSAIQMELYHALLEHPEFLETIQNRIRYFMIDEYQDSNPIQER
IILLLAGKEKNICVVGDEDQAIYRFRGASVENILRFPQVFEEDCETVYLEKNYRSTEEIV
YLCNQWMKRIEWQGERFDKQMYSARYESIERKSVFRISGSPHPRKRKELIFWLQELIKRK
KVEDYSQIVFLFDNFRSPQVKRLEEDLEMAGIPVYCPRARNFFSREEVKLFFGIFLALSP
EVQEEVKNYSYYEDCLFRARKWAKENIELQEWILEKRKRELEDFLTEYYEILSFSPFREI
LEKQEENPRKAREIYNLSLIGKMIQSFQKLCHMKEESEIKKPEYLKYFFQSYLKKFIEKG
VNEFEKKGEFPKGCIPFLTIHQSKGLEFPIVIVSSLYQNPPIYREKIRKSYDSLFQKKKL
LQEHNEELYDFYRKFYVAFSRAKNALVFLDYDVSSSFQALVRHSVEISSDHFQWEDILEE
KYSPSEETASYSYTTDIALYDLCPRKYFFLRKISFPSIEKEKMLFGNLLHRCLEKMHKYE
KYKNGIEILLTKEKENLEKRSKFSFQKEELEKARAILEEYREKSEMLYENILQAERKEFL
EWRGSMLYGEIDLLAFQGEQWKIIDFKTGTENPMYIEQLVLYQELLKKYQKGQDVLLSLY
YLLEQREEKIELSLEEREKILDKIQSTIQKIQKKDFSKREYQEEICDACEFYAFCYRKEN
L
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
gtgctggataaaaatcaacaaaaagtagtgcaatataccaaagggcctctattggttatt
gcaggtcccggttccggaaaaacaaaaactttagtggaacgtagcgttcacttactggca
gaaaaaaagatagagccttctcaaatcttattgagtacttttactgaaaaagcggcaaga
gaattgagaatgcgaattcaaaaagctttgcaggaaaagggagtttctgtttccattgag
gaaatgtatttgggaaccatgcactctatttggcttcgtatactggaagaatatatcaca
tattctcattatgagaatggaatagaagttttggatgaggaagaagaaaagttcttcctc
tattcacaattgcgacaatttaaacagttaaacttctatatggaatttttcgagagggaa
cacagttacggagattgggcgcaaagtcgtctattacaaagtattttttccaaaattcag
gaagaagcggtcgatattccttccattcgcagctatcaggaagaaattcaatttctgaaa
gctgcttatgaactctatcaaagtcttcttcggaaggaaaataaaatcagcttttccgcc
atccaaatggaattgtatcatgccctcttggaacatccggaattcttggaaacaatacag
aatagaatacgatactttatgattgatgaatatcaggacagcaatccgattcaagaaaga
atcattcttttattggcaggaaaagaaaaaaatatttgtgtggtaggagacgaagaccaa
gccatttatcgttttcgaggagccagtgtggaaaatattttacgttttccgcaagtcttt
gaagaagactgtgaaaccgtttatttggaaaaaaattatcgttctacggaagagattgta
tatctgtgcaatcaatggatgaaacgcattgaatggcagggagaacgctttgacaagcaa
atgtattccgcacgctatgaaagcattgagcgaaaatccgttttccgtatttctggctcc
cctcatccccgtaaacgaaaagaattgattttttggctgcaggagttgataaagagaaaa
aaagtggaagattatagtcagattgtttttttgtttgataacttccgttctcctcaggta
aaacgcttggaagaagacttggaaatggcgggaattcctgtgtattgtcccagagcgaga
aactttttttccagagaggaagtaaaattattttttggaatttttttggctctctctccg
gaggtgcaggaagaggtaaaaaactattcctactatgaggattgcctatttcgagctaga
aagtgggcaaaagaaaatattgagctacaggaatggattttagaaaaacgcaaaagggaa
ttggaagattttttaacagagtattatgagattctatccttttctcctttccgagaaatt
ttggaaaagcaggaggaaaatcccagaaaagcaagagagatttacaatttgagtttgatt
ggaaaaatgatacaaagctttcaaaaattgtgccatatgaaagaagaaagtgaaataaag
aagccggaatatttaaaatattttttccaaagttatctaaaaaaatttattgaaaaaggt
gtgaatgaatttgaaaagaaaggggaatttccaaaaggatgtattccgtttttgacgatt
catcaatcaaaaggtttagaatttcccatcgtgattgtttcctctctctatcaaaatcca
cctatttatcgtgagaaaatacgaaaatcctatgacagtttgtttcaaaagaaaaaattg
ttgcaggaacacaatgaggaattgtatgatttttaccgaaaattctatgtcgccttttcc
agagcaaaaaatgctttggtatttttagactatgatgtaagttccagttttcaagctttg
gtacgtcattcggtggaaatttcttccgatcattttcaatgggaagatattttggaagaa
aaatacagcccttctgaggagacggcaagttattcttacaccacagatatcgctctttac
gacttgtgtccgagaaaatatttcttcctgcgaaaaatttcatttccgagcatagaaaaa
gaaaaaatgctctttggaaatttactacatagatgtttagaaaaaatgcacaaatatgaa
aaatataagaacggaatagagatacttcttacaaaagaaaaagaaaatttggagaaaagg
tctaaattttcctttcaaaaggaggagttggaaaaggcaagagcaattttagaggaatat
cgagaaaaatccgaaatgctctatgaaaacatcctacaggcggaacgaaaagaatttttg
gagtggagaggcagtatgctttacggagaaattgatcttctggcttttcagggagaacaa
tggaaaattattgattttaaaacaggaacagaaaatcccatgtatatagagcagctcgtg
ttatatcaggaattgctgaaaaaatatcagaaagggcaagatgttttgctatctctttat
tatcttttggaacagagagaagaaaaaatagagctttctttggaagaacgggaaaagatt
ttggacaaaatacagtccacgattcaaaaaattcaaaagaaagacttttcaaaaagagaa
taccaagaagaaatttgtgatgcctgtgaattttatgctttttgttatcgaaaggaaaac
ttatga
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