Fusobacterium necrophorum subsp. funduliforme: BSQ88_05865
Help
Entry
BSQ88_05865 CDS
T06168
Name
(GenBank) AAA family ATPase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fnf
Fusobacterium necrophorum subsp. funduliforme
Pathway
fnf03420
Nucleotide excision repair
fnf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fnf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSQ88_05865
03430 Mismatch repair
BSQ88_05865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fnf03400
]
BSQ88_05865
Enzymes [BR:
fnf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSQ88_05865
DNA repair and recombination proteins [BR:
fnf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BSQ88_05865
MMR (mismatch excision repair)
Other MMR factors
BSQ88_05865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_11
AAA_12
CarD_TRCF_RID
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
AYV93214
UniProt:
A0A162JFE6
LinkDB
All DBs
Position
complement(1225746..1227899)
Genome browser
AA seq
717 aa
AA seq
DB search
MSLLERLNEKQREAAATIEGPLLILAGAGSGKTRTITYRIAHMIEELGIPAYLILAVTFT
NKAAKEMKERVISLIGEEAERATISTFHSFGVRLLRIYGNKLGYQANFTIYDVEDQKRII
KAIMKELNLQNTDLSEKKLASLISKLKEEGISADDYEKDNYEYEAKIIAEIYRRYDARLK
NQNGIDFSDILLNTRKLLDIPEILEKIQNKYQYIMVDEYQDTNNIQYEIVNKIAQKHRNI
CVVGDENQSIYGFRGANIQNILNFEKDYQDAMVVKLEQNYRSTAMILEAANAVIRNNLSS
KDKNLWTNKENGDKIKVLKALNQRDEVEKVISEIAKEKQKGRAYRDMTILYRTNAQSRVF
EEAFLRYRIPYKIFGGMQFYQRAEIKDILAYLSLINNPLDETNLLRIINIPKRKIGDKTL
EKIRSYAGEHSLTFFESLERAGEISGISSGLAGTIQQFYDLIQELMALAPYENTGVIFST
LLEKIGYKQYLETAYEDAEARISNIEELGTSILELENLLGELSLRDYLENVSLVSATDDL
QENQDYIKLMTIHNAKGLEFPVVFLVGAENETFPGSSKFSCEEDLEEERRLCYVAITRAE
EKLIISFSITKYIYGDTLPTQESIFLKEIPEEYKWEEWKEKEVKLPKIQTKNTISTEDLK
KKALNLPFSVGERVMHKKFGLGVVRTLEEKKIIVEFVTGKKEIAAIVAEKFLSKIES
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgctagaaagattaaatgagaaacagagagaagctgccgctacgatagagggt
cctttattgatattggcaggagccggttccggaaagaccagaaccattacatatcggatt
gctcatatgatagaagaacttgggattccggcctatcttattttggctgtgacctttacc
aataaagctgcgaaagaaatgaaagaacgggtgatctctttgataggagaagaagcggag
cgagcaaccatttcgacctttcactcctttggagtcagacttcttagaatctatggaaat
aagttaggctatcaggcaaactttacgatttatgatgtagaggatcagaaacgaattatc
aaggcgattatgaaagaactgaatttacagaatacggatttgtctgaaaaaaaattggct
tctttgatttcaaaattaaaagaagaaggaatttccgcagatgattatgaaaaagataac
tatgagtatgaagcaaagataattgctgaaatttatcgacgatatgatgcaagattaaaa
aatcaaaatggaattgatttttcggatattctattaaatacaagaaagttgctggacatt
ccggaaatcttggaaaaaattcaaaacaaatatcaatatatcatggtagatgaatatcag
gataccaataatattcagtatgaaattgtaaataaaatagctcaaaaacatagaaatatt
tgtgtggtaggagatgaaaatcaaagtatttacggctttcgaggggctaatattcaaaat
attttaaattttgaaaaagattatcaagatgccatggtcgtaaagttggagcaaaattat
cgttccaccgctatgatcttggaggccgccaatgccgtgattcgaaacaatctttcctcc
aaagataaaaatttatggacgaataaggagaacggagataaaattaaggtattaaaagct
ttgaatcagagagacgaggtggaaaaagtcatctcggagattgccaaagaaaagcagaaa
ggaagagcctatcgggatatgacaattttatatcgaacgaatgctcaatcaagggtgttt
gaagaagcttttttgcgatatcgaattccctataaaatttttggaggaatgcaattctat
caaagagctgaaatcaaagatattttagcttatttaagccttatcaacaatcctttggat
gaaacaaatttattgagaattatcaatattccgaagagaaaaataggagataagacctta
gaaaaaattcgaagctatgctggagaacattctcttactttttttgaaagtttggagaga
gcgggggaaattagcggaattagcagtggattggcaggaactattcagcaattctatgat
cttattcaggaattgatggctttggctccttatgaaaataccggtgtcattttttcaact
ttgcttgagaaaattgggtataaacagtatttagaaacagcttatgaagatgcggaagca
agaatttcaaatattgaagaactgggaacttcgattttagaattggaaaatttattgggc
gagttaagtttacgagattatttggaaaatgtttccttggtcagtgcgacggatgatttg
caggagaatcaggattacatcaaattgatgaccattcataatgcaaagggactggaattt
ccggttgtatttctggtaggagcggaaaatgaaaccttcccgggaagttccaagttttct
tgtgaagaagatttggaagaagaaagaagactgtgttatgtagccattacaagagcggaa
gaaaaattgattatcagtttttcaattacgaaatacatctatggggatacactccctact
caagagtcgattttcttaaaggaaattccggaagaatataagtgggaagaatggaaagaa
aaagaagtgaaacttccaaaaattcaaactaaaaatacaatttctacagaagatttgaaa
aagaaagctttgaatttacctttttcggttggagagagggttatgcataaaaagttcggt
ttgggtgtcgtaagaactttggaagaaaagaaaattattgtagaatttgtaacaggaaag
aaagaaattgcagcgattgtagcggaaaaatttttatctaaaatagaatcatag
DBGET
integrated database retrieval system
