Fusobacterium necrophorum subsp. funduliforme: BSQ88_08740
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Entry
BSQ88_08740 CDS
T06168
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fnf
Fusobacterium necrophorum subsp. funduliforme
Pathway
fnf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fnf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSQ88_08740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fnf03019
]
BSQ88_08740
Messenger RNA biogenesis [BR:
fnf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSQ88_08740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
eIF-1a
PDEase_II
Lactamase_B_6
ODP
Motif
Other DBs
NCBI-ProteinID:
AYV93749
UniProt:
A0A162IJW5
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All DBs
Position
complement(1862689..1864557)
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AA seq
622 aa
AA seq
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MNKLEDGKGGFDNIRKALKNIKNEIDELKSPKKKKQVNLKKEMKINEKKAEKKETKKTGS
KSLPSKKEDKMFVIPLGGLEEVGKNMTVLQYKDEIIVVDVGAIFPDESLPGVDLVIPDFT
FLENNKEKIKGVFITHAHEDHIGAIPYLYEKIGKDIPIYGGKLTMAFVKSKFDNVGLSKK
LPKMKVVTGRTKVKVGKYFSVEFVKVTHSITDSYSVSIKSPAGHVFHTGDFKIDLTPVDG
DGVDFARLAELGDEGVDLLLSDSTNSEVEGFTPSEKSVGEAFKQEFMRAKGRIIIAVFAS
HIHRIQQIIDIAVRNHRKIAIDGRSLVKVFEIAPTVGCLNIPEGALVSLAEVDKLKDNKV
VILCTGTQGEPMAALSRIAKNMHKHIKVKEGDTVIISATPIPGNEKAASSNINNLLRFDA
EVVFKKIAGIHVSGHGSKEEQKLMLNLIKPKHFMPVHGELRMLKAHMKTAMETGVPKNNI
LITQNGNKVEVTKNYAKINGKVTAGETLVDGLGIGDIGSAVIKDRQQLSQDGIVVVAYTI
ERKTGKIIAGPEIATRGFVYMKDAEELMKEASDLLEEKIPFSEKYLPKEWGLLKNNVKDC
AAKFFYNKTKRNPMILPIITEL
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaataaattagaggatggaaagggtggatttgacaatattagaaaagcattaaagaat
attaaaaatgaaatagatgagttaaaatcaccgaaaaaaaagaaacaagtaaatttgaaa
aaagaaatgaaaataaatgaaaaaaaagcagaaaaaaaagaaactaagaagacaggaagt
aaatctcttccttccaaaaaggaagataaaatgtttgtcattcctttaggaggattggaa
gaagtcgggaaaaatatgacggtattgcaatacaaggatgaaattattgttgtggatgtg
ggggcaatttttccagatgaaagtttgccgggagttgatttagtcattccggattttacc
tttttagaaaataataaagaaaagatcaaaggagtatttattactcatgctcatgaggac
catattggagccataccctatttatatgagaaaattggaaaggatattccaatttatggg
ggaaaattgacaatggcttttgtgaaatcaaaatttgacaatgtaggactttccaaaaaa
ttaccaaaaatgaaggtagtaaccggtagaacaaaggtaaaagtaggaaagtattttagc
gtggaatttgtaaaggtaacgcattccattacggattcttattcggtgtcgatcaagtct
ccggcaggacatgtgtttcatacaggagattttaagattgatttgacaccggtagatgga
gacggggttgattttgcaagattggcagagttgggagatgagggagtggatttattattg
tccgattccacaaattcggaagtcgagggatttactccgtcagaaaaaagtgttggagaa
gcatttaaacaagaatttatgagagcaaagggaagaattatcattgccgtttttgcttct
catattcatagaattcaacaaattattgatattgcagtgagaaatcatagaaaaatcgcg
attgacggaagaagtttagtgaaagtatttgagattgctccgacggtaggttgtttgaat
attccggagggagctttggtttctttggcggaggtggataaattaaaagataataaagtg
gttattctatgtaccggaacacagggagaacctatggcagcactttccagaattgctaag
aatatgcacaagcatattaaagttaaagagggggatacagtcattatttcggcgactccc
attcccggaaatgaaaaggcggcttccagcaacatcaacaatttattacgatttgatgct
gaagttgtatttaaaaaaattgccgggattcatgtttccggacatggaagcaaagaagaa
caaaagttgatgttaaatttaattaagccgaaacatttcatgccggttcatggagaattg
agaatgttaaaggctcatatgaaaacagcaatggaaacaggggttcccaagaataatatt
ttaattactcaaaatggaaacaaagtggaagtgacaaaaaattatgcaaagatcaatgga
aaagttactgccggagaaaccttggttgacggattgggaattggcgatattggaagtgcc
gtaattaaagatagacaacaactttctcaagatggtattgttgtcgtggcatataccatt
gaacgaaaaacaggaaagattattgcaggacctgaaattgcaacaagaggttttgtttat
atgaaagatgcggaagaattaatgaaagaggcatctgacttattggaagagaagatacca
ttttccgaaaaatatcttccgaaagaatggggattattaaaaaacaatgtcaaagattgt
gcagcgaaattcttctataataaaaccaagcgaaatcccatgattttaccaattattaca
gaactataa
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