Fusobacterium necrophorum subsp. funduliforme: BSQ88_10260
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Entry
BSQ88_10260 CDS
T06168
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fnf
Fusobacterium necrophorum subsp. funduliforme
Pathway
fnf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fnf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSQ88_10260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fnf03400
]
BSQ88_10260
Enzymes [BR:
fnf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSQ88_10260
DNA repair and recombination proteins [BR:
fnf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BSQ88_10260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
Motif
Other DBs
NCBI-ProteinID:
AYV94015
UniProt:
A0A170MXF8
LinkDB
All DBs
Position
complement(2126997..2129948)
Genome browser
AA seq
983 aa
AA seq
DB search
MKKIQKYRGEIPYFIQQNCTDILIYVCSSYRNLEEYFSVLKDLFSIPVYALEAREEEESI
SQRYEIFEFFKRKKKAILLLTLDMFLRKYEAIGAYQVFQVGKEYSLSFLKETLEKYHYRR
NYLLEKRGEYSIRGDILDIFPYTDSFPVRIEFFGEEIERVSYFEIENQKSFQSMTEYKMY
IDNNNAEENLLTFLKIDSKKHKIFFENVELLSYKLEEMILIEEKEEKKKEYRKEFETLYN
FGTEIQLQQFHYQELENFRKKEYLEQIQKRKKIIIKSSEAEKYKERYSDTVSLYQKYPYF
EGYENEMELVLTDRELKGIRVKRKREKKKRLKVIRPDQIQEGEYIIHENYGVGLYLGIEL
IDGKDYFKIKYADEDKLFVPLESIHKIEKYVHVPGVIPEIYHLGTRGFQRKREKLQEEIL
EFAKEIVEIQARRNSTQGFRYSPDTVWQEEFEESFPYTETAAQKKAIQDVKQDMEMGKVM
DRLICGDVGYGKTEIAIRATFKAIMDQKQVVVLAPTTVLAEQHYQRFQERFLNYPIEIAV
LSRMKTAKEQKEILEKIKNGSIDLIIGTSRLLSDDLEFKDLGFLIIDEEQKFGVKAKEKF
KKMRGNLNILAMTATPIPRTLNLSLLGIRDLSIVDIPPEGRKAVKTFFIEKKEETIVKAI
LQELSREGQVFYIFNSVKRIQEKVKELEKILPSYVRVDCIHGKMSGKELKYTIEQFENMQ
IDVLVSTTILENGIDIENANTMIIEGMERLGLSQIYQLRGRIGRGRRQSYCYCIVADYKS
KKAEEREKSLMELGKGSGLELSMEDMRIRGAGEILGEKQHGMIETLGYHFYMKMLEEEIA
KLKGEKKEEKEKKIDLSLCFPKYIPDSYIQKEEKIIVYKRALSLQSMEEIIEFEAEILDR
FGKFPVEVKGFFQFLKIQYFCRNFGIYELIEKEKEYWIRFEEEKVNVDRIIDLLSQQKID
YIQKTKQIIFHGDIFHFFELYQK
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatacaaaaatatagaggagaaattccttattttattcaacaaaattgtaca
gatatcttaatttatgtttgttcttcttatcgaaatttagaagaatatttttctgtttta
aaagatttgttttccataccggtctatgctttagaagctagagaagaagaggaaagtatt
tcacaaagatatgaaattttcgaattttttaaaagaaaaaagaaagccattttattattg
accttagacatgtttttaagaaaatatgaagccattggtgcttatcaagtgtttcaagtc
ggaaaagaatattctctttcttttttgaaagaaactttagaaaaatatcattatcgaaga
aattatttattggaaaaaagaggagaatatagtattcgaggagatattttagatattttt
ccctacacggattcttttccggttcgaattgaattctttggagaagaaatagaaagggtt
tcctactttgagattgaaaatcaaaaaagttttcaatctatgacagaatataaaatgtat
atagacaataataatgcagaagagaatttattgacttttttaaaaatagactctaagaag
cataaaatcttttttgaaaatgtggagcttttatcttataaactggaagaaatgatactg
attgaggagaaagaagaaaagaaaaaagagtatagaaaagaattcgaaaccttatataat
ttcggtacggaaattcaattacaacagtttcattatcaagagttggaaaattttagaaaa
aaagaatacttagaacaaattcaaaaaagaaaaaaaattattattaaaagttcggaagct
gaaaaatataaagaaaggtattccgacaccgtttctctttatcaaaaatatccttatttt
gagggatatgaaaatgagatggaattggttcttacagatagagaactcaaaggaattcgt
gttaaaagaaaaagggagaaaaagaaaagattaaaggtaataagacctgatcaaattcaa
gagggagaatatatcattcatgaaaattatggtgtcggtctgtatttgggaatagaactt
attgatggaaaggattattttaaaattaaatatgcagatgaagataaattgtttgtccct
ttggaaagcattcataaaattgaaaaatatgttcatgttcccggtgtgattcctgaaatt
tatcatttaggaacgagaggatttcaaagaaaaagagaaaaattgcaagaggaaatttta
gagtttgcaaaagaaatcgtggaaattcaggcaagaaggaattcgacacagggatttcga
tattcaccggataccgtttggcaggaagaatttgaagaaagctttccttacacggaaaca
gccgctcaaaaaaaagcaattcaggatgtaaagcaagatatggaaatgggaaaagtaatg
gatagactcatctgtggtgatgttgggtatggaaaaacagaaattgcaatccgagctacc
tttaaggcaatcatggatcaaaaacaagtagtagtattagctcctactacagttttagcg
gagcagcactatcaaaggtttcaagaaagatttctgaattatccaattgaaattgctgtt
ttaagtagaatgaagacagcaaaagaacaaaaagaaattttggaaaaaataaaaaatggt
agtatcgatttaattataggaaccagtcgattactttcggatgatttggaatttaaagat
ttaggatttttaattattgatgaagaacagaagttcggggtaaaagcaaaagaaaaattt
aaaaaaatgagaggcaatttgaatatcttagcaatgaccgcaactccgattcctcgaact
ttaaatctatctctattgggaattcgagatctttccattgtagacattccccctgaagga
agaaaagcagttaaaactttttttatagaaaaaaaagaagaaaccattgtgaaagctatt
ttacaagagttatctcgggaggggcaagtattttatatttttaattctgttaaaagaatc
caagaaaaagtgaaagagttggaaaaaatacttccttcctatgtaagagtagattgtatt
catggaaaaatgtcgggaaaagaactaaaatatacaatagaacagtttgaaaacatgcag
attgatgttttggtttctactacaattctggaaaatggcattgatatcgaaaatgcaaac
accatgattatcgaaggaatggaaagattaggtctttctcaaatttatcaactgagagga
agaataggacgaggaagaaggcaaagttattgttattgtatcgtagcagattacaaaagt
aaaaaagcggaggaaagggaaaaatctctcatggaattaggaaagggaagtggtttggag
ctttctatggaagatatgagaattcgtggagccggagaaattttgggagaaaaacaacat
ggaatgattgagactttaggatatcatttttatatgaaaatgctggaagaagagattgca
aaattaaaaggagaaaagaaagaggaaaaagagaaaaaaatagatttatcgctttgtttt
ccgaaatatattccggattcttatattcaaaaggaagaaaaaattattgtgtataagaga
gctttatctttacaaagtatggaggagattatagagtttgaagcagaaatattagataga
tttggaaaatttcctgtggaagtaaaaggtttttttcaatttttgaaaattcagtatttt
tgtcgaaactttggaatttatgaattaatagagaaggagaaagaatattggattcgattt
gaagaagagaaagtaaatgtagatcgtattatagatttactctctcaacaaaaaattgat
tatattcaaaaaacaaaacaaattatttttcatggagatatcttccatttttttgaactt
tatcaaaaataa
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