Fervidobacterium ngatamarikiense: JM64_01320
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Entry
JM64_01320 CDS
T10794
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
fng Fervidobacterium ngatamarikiense
Pathway
fng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JM64_01320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fng03019
]
JM64_01320
03016 Transfer RNA biogenesis [BR:
fng03016
]
JM64_01320
Enzymes [BR:
fng01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
JM64_01320
Messenger RNA biogenesis [BR:
fng03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JM64_01320
Transfer RNA biogenesis [BR:
fng03016
]
Prokaryotic type
tRNA degradation factors
JM64_01320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
Motif
Other DBs
NCBI-ProteinID:
ANE40802
UniProt:
A0A172T1J1
LinkDB
All DBs
Position
complement(282639..284723)
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AA seq
694 aa
AA seq
DB search
MSVREWRKVLFGKEWVFQHGKVAKQSAGSIWARFGDSVVLATANVSDNVVEGIDFVPLTV
EYMEKFYAAGKIPGGFIKREGKPSESGILSSRLIDRPIRPLFPKTLRNEVQVIVTVLSVD
PDCPTDVLGISAASLALNISKIPFDGIVAGVQVGYVDGQFIVFPTAEQLERSKIDIVVAG
TKDAITMVEGEAKEVTEDEMLQALMVAHEAIKEIVAFQEEIIKEFNVEKMPLPEPKYNVE
LVEKFAEYVDMNELEKRIFARGKQERVELADEYYESIVQKFFEENNISEEEQEEYKLPLK
EKYDELSKKLMRKIIIERGLRADGRGPKDIRPISCEVGLLPRTHGSALFTRGETQSLGIV
TLGSPAEEQIIDTLIEEGTKRFMLHYNFPPFSTGEVKPLRLSRREIGHGHLAERAVKAVI
PSEDEFPYVIRVVSEILESNGSSSMATVCSASLALMDAGVPIKKHVAGVAMGLILEGDKS
VILTDIIGLEDHWGDMDFKVAGTRDGITAFQMDCKVSGVSEDLLRAALYQAKEARMFILD
KLYETISEPRKELSPYAPRIKWFYIDPTRSGELIGPGGKVIKSIIKMFDVEISIDDETGK
VTVSGVDPEKVQGAIDYIQNMFRDISVGDIYDGKITRVENYGIFVEIAPGKIGLAHASKL
GNVKPTSFKVGDRVKVEVISIDEIGRFQLRRVEE
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttcgagagtggcgaaaggtattatttggaaaggagtgggtgtttcaacacgga
aaggtagcgaagcaatcagcaggttcaatttgggcaagatttggtgatagtgttgtcctt
gcaacagcaaacgtttcggacaacgtagttgaaggtatcgattttgtcccgttaacagta
gagtatatggagaagttctacgcagcaggtaagattcctggtggttttatcaaacgagaa
ggtaaaccttcggaaagcgggatactttcctcaagacttatagacagaccaataagaccc
ctcttcccaaaaacgctaagaaatgaagttcaagttattgtgacggtgctttcggtagac
ccggattgtccaactgatgtgcttggtatatctgctgcgtcgttggctttgaatatttca
aaaataccgttcgatggcattgttgcaggtgtccaggttggttacgtggatgggcagttc
attgtctttccaacagctgaacaacttgaaagaagtaagatagatatagttgttgcgggt
acaaaagacgcgattaccatggtcgaaggtgaagcgaaagaagttaccgaagatgagatg
ctacaagctctcatggttgcccatgaagctatcaaagaaattgtagcgttccaggaagaa
attatcaaggaattcaatgtggagaaaatgcctttaccagagccaaagtacaatgttgaa
cttgttgaaaaatttgcggaatatgtggatatgaacgaattagaaaagaggattttcgca
cgtggtaagcaagaacgtgtggagttggctgatgaatactatgaaagcatcgtgcaaaaa
ttctttgaggagaacaacataagcgaggaagaacaagaagaatacaaactgccgttgaag
gaaaaatatgatgagctatccaaaaagcttatgagaaagataataatcgagcgtggtctt
agggctgatggaagaggaccaaaggatataagacccatcagttgtgaggtagggctactt
ccaagaacacacggttccgcactcttcacaaggggtgagacccaaagccttggtattgtg
acactcggttcgccagcggaagaacaaataattgacactttgattgaagaaggcacgaag
aggtttatgctgcattataacttcccaccgttttccacaggtgaagtgaaaccgttgaga
ctgagcagaagagaaataggtcacgggcaccttgcagaaagggcggttaaagctgttata
ccttcggaagacgaatttccgtacgttataagggttgtttcggaaatccttgaatccaac
ggctcttcgtcgatggcaacagtatgttctgcttcgcttgccttgatggatgccggggtt
cctatcaaaaagcacgttgcaggtgttgcgatgggtttgattcttgaaggagataaatcg
gtcatattaacagatattataggacttgaggaccactggggtgatatggacttcaaggtc
gcaggaacaagagatggaataacggcattccaaatggattgtaaggtttccggcgttagc
gaagacttacttagagcagcactttaccaggcaaaagaggcaaggatgttcatacttgat
aagctatacgagacgatttctgaaccacgaaaagaactctcaccttatgcaccaaggatt
aaatggttctacattgacccaaccaggagtggtgaacttataggacctggtggaaaagtg
attaagtccattataaagatgttcgatgttgagatatctatagatgatgaaacaggaaag
gtcacagtcagcggtgtagatccagaaaaggtgcagggagcaattgattacatccaaaat
atgttccgtgatatctcggttggggatatttacgatggtaagataacaagagttgagaat
tacggcatcttcgtagaaatcgcaccaggtaagataggtttggcacatgcctctaaattg
gggaatgtgaagcctacatctttcaaagttggagatagggtgaaagtagaagttataagc
atagacgaaattggaaggttccaacttaggagggttgaagaatag
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