Fervidobacterium ngatamarikiense: JM64_02400
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Entry
JM64_02400 CDS
T10794
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fng Fervidobacterium ngatamarikiense
Pathway
fng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JM64_02400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fng03019
]
JM64_02400
03009 Ribosome biogenesis [BR:
fng03009
]
JM64_02400
Enzymes [BR:
fng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JM64_02400
Messenger RNA biogenesis [BR:
fng03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JM64_02400
Ribosome biogenesis [BR:
fng03009
]
Prokaryotic type
rRNA helicases
JM64_02400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ERCC3_RAD25_C
AAA_22
UvrD-helicase
Utp25_C
SLFN-g3_helicase
CobA_CobO_BtuR
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ANE40978
UniProt:
A0A172T1U8
LinkDB
All DBs
Position
509514..511160
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AA seq
548 aa
AA seq
DB search
MKNTDVTKSVERGSGFEVFSLSEETLLAIEKKGYTQPTEIQKLVLPVALGTDKDIIAQAQ
TGTGKTAAFVIPILERIDFKVDKSIKALIVTPTRELALQIYEEIKSLRGNRKIKVATVYG
GQSMERQLKDLAKGVDIVVGTPGRLLDHINRKTLDLSNVKYLVLDEADRMLDMGFLDDVL
EIIKQTPETKRTFLFSATMPKEIVSIARKFMKDYEHISTVKEELTTENAEQLYFEVEEGD
KLPLLCRIIDMNPEFYGIVFCQTKVEVDEIAKKLSDLGYNADGLHGDYSQSQRERVLDKF
RKKQLNILVTTDVAARGIDIEGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGLAITFVTR
SDYYHFTRVKRFAKAEIVKDKIPLVEDILNRQLESVINNIRKESYVSNELFRQVAQKLIE
EIGPTEAVEMLLHTLLKEKIDITRYGNIKVKDFSKHSENNSTVRLFVALGSSKGLDKKRL
VEYISEKTGIEPKNINNVRVFETYSFIDVNEADADIIMRTLNKTTGKSGKYSKSSKPLVQ
KAREKKSN
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacacagatgttacgaaaagcgttgaaagaggaagtggtttcgaagtttttagc
ttaagtgaggaaacactcttagctattgagaagaaaggttatactcaacccactgaaatt
cagaagttggtgcttcctgtcgctcttgggactgataaagatataatcgctcaagctcag
actggaacaggaaagacagcggcatttgtgataccaatacttgaacgtatcgactttaag
gtagataagagtatcaaagcgttgatagtcacacctacaagagaattagcacttcagata
tacgaggagataaaaagcctgagagggaatcgtaagattaaagtggccacggtttatgga
ggacaatcgatggaacgacaacttaaagacctagcaaaaggtgtagatattgttgttgga
acacctggaagattgcttgaccatataaatcgcaaaacgctcgatttgtccaatgtgaag
tacttggtattagatgaagctgacagaatgcttgacatgggatttttggatgatgtgctt
gagataattaaacaaacacctgaaaccaagcgcacatttctcttttcagcaacaatgccg
aaagaaatagtaagcattgcaagaaaattcatgaaggattatgaacatatatccactgta
aaagaagaactcacaacagagaatgcagaacagctttacttcgaagttgaagagggcgat
aagttaccactcttgtgtagaataattgatatgaatcctgagttctatggtattgtcttc
tgccagacaaaagtcgaagtcgatgagattgctaagaaactgtcggacctggggtataac
gcagatgggttgcacggtgattattcacaatctcaaagggaacgagtgcttgataaattt
agaaaaaagcagttgaacatacttgttactacggatgttgcggcaaggggaatagatata
gaaggactcacccatgtcatcaattactctgttccaagagatccggaatactatgtacac
aggataggtcgaacgggaagagcagggaagaaaggacttgcaattactttcgtaacaagg
agcgattactatcattttactagagtaaagagattcgcaaaggcagagatagtaaaggat
aaaatccccttggttgaagatatacttaacaggcaattagaaagtgttatcaataacatc
aggaaagaatcatacgtttcgaatgaactcttcagacaagtcgctcaaaaattgattgaa
gagataggacctacagaagcagttgaaatgttacttcatacccttttaaaagagaagata
gatattacacgttatggaaacataaaagtgaaggatttttcaaaacactcagagaataac
tcgactgtgaggttatttgtggcacttggttcttctaaaggtttggataaaaagaggctt
gttgaatacatatctgaaaaaacgggtattgaaccaaaaaacataaacaacgtgcgagtc
tttgagacatattctttcatagacgttaacgaagccgatgcagatattattatgaggact
ctaaacaagaccacaggaaagagtggaaaatattcgaaatcctccaaacctttagttcag
aaggcacgagaaaagaaatcgaattga
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