Fervidobacterium ngatamarikiense: JM64_04225
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Entry
JM64_04225 CDS
T10794
Name
(GenBank) tRNA-splicing ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fng Fervidobacterium ngatamarikiense
Brite
KEGG Orthology (KO) [BR:
fng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fng03016
]
JM64_04225
Enzymes [BR:
fng01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JM64_04225
Transfer RNA biogenesis [BR:
fng03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JM64_04225
Prokaryotic type
tRNA splicing ligases
JM64_04225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
SoPB_HTH
Motif
Other DBs
NCBI-ProteinID:
ANE41273
UniProt:
A0A172T347
LinkDB
All DBs
Position
complement(895988..897403)
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AA seq
471 aa
AA seq
DB search
MSIPGVEKEGKYIYRIKKTGNMRVDAIVLADYETIDEEAIEQLKNVATLPGIVKAAYAMP
DIHWGYGFPIGGVAAFDLEDGIISPGGVGFDINCGVRMLVVDGNSDIVKKNLESLIKRIY
ESVPVGVGETSDLRFSKNDFKKIVEQGVRKVIEMGYGTEEDLLRIEDRGTLEDCDFSDVS
EEAYERGKDELGTLGAGNHFIEIQLVEEVYDEEIASVFGIKKGDITILIHTGSRGFGHQI
ATDYIKYMRDNLKDHNKNLPDKQLINAPFKSEWGQAYYSAMNCAANYAFANRQIITHMIR
KAFKSVVGMNVRLVYDVAHNIAKVEEYEIDGRKRKVIVHRKGATRAFGPGNPALPEVFKK
TGQPVIIPGSMGTASYILVGTKKAEEITFGSTAHGAGRALGRREATRELSVNHVLKELES
KGIKIMAKSKKGIVEEAPEAYKNVDKVVQIVDEIGISLKIAKCTPLGVVKG
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcccgggtgttgagaaggaaggaaaatatatttacaggattaaaaaaacgggc
aatatgagggttgatgcaatagttcttgctgattacgaaactatcgatgaggaagctatt
gaacaacttaaaaatgtggcaacattaccgggaattgtgaaagcagcatacgctatgcct
gatatacattggggatacggctttcctattggtggtgttgcagcattcgatttagaagat
ggaataataagccccggcggggttggttttgacataaattgcggtgtcagaatgctggta
gtagatggcaattccgatattgtaaagaagaacttggaaagtctcatcaaacgcatctac
gaaagcgtacctgttggagtcggtgaaacaagcgatttaaggttttcaaaaaacgacttt
aaaaagatcgtagagcaaggagtcaggaaagttattgaaatgggctatggaacagaagaa
gatttgttgcgaatagaagacagaggaacattagaagactgcgacttttctgatgttagt
gaagaagcgtatgagagagggaaagatgaactaggaacacttggtgcaggaaaccatttc
attgagatacaactagtagaagaagtatatgatgaggaaatcgcatctgtgtttggtatt
aaaaagggagatataacgatacttatacataccggtagcagaggctttggacaccagata
gcaaccgattacataaaatacatgagagacaatctcaaagaccacaacaagaatctacca
gacaaacagcttatcaatgcgccctttaaaagcgagtggggacaagcatattacagcgcg
atgaactgcgcagcaaactatgcatttgcaaataggcaaatcataactcacatgattagg
aaagcgttcaaaagtgtggttggaatgaatgtcagacttgtatatgacgtggcacacaac
attgcaaaagtggaggaatacgaaatcgacggaagaaaaagaaaagtgattgttcacaga
aagggtgcaacacgagcatttgggcctgggaacccagccttgccagaagttttcaaaaag
actgggcaaccggtcattatacccgggagtatggggacagcgtcttacatacttgttgga
accaagaaagccgaagagataacctttggctcaacagctcacggtgcaggtagagcgctt
ggaagaagggaagcgacaagagaattatcggtgaaccacgttctgaaagaacttgaatca
aagggcatcaaaatcatggcgaagtccaaaaaaggtatagtggaagaagcaccggaggct
tacaaaaacgttgacaaagtggttcaaattgtcgatgaaattggaatctctttgaaaata
gccaagtgtactccacttggagtggttaaaggatga
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