Fervidobacterium ngatamarikiense: JM64_07560
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Entry
JM64_07560 CDS
T10794
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fng Fervidobacterium ngatamarikiense
Pathway
fng03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fng00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JM64_07560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fng03021
]
JM64_07560
03400 DNA repair and recombination proteins [BR:
fng03400
]
JM64_07560
Enzymes [BR:
fng01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JM64_07560
Transcription machinery [BR:
fng03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JM64_07560
DNA repair and recombination proteins [BR:
fng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JM64_07560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Plasmid_parti_N
Motif
Other DBs
NCBI-ProteinID:
ANE41823
UniProt:
A0A172T4Q3
LinkDB
All DBs
Position
complement(1627436..1630984)
Genome browser
AA seq
1182 aa
AA seq
DB search
MKTYQVGKRIRYSFGKVDEILNVPDLVEIQHKSFKELLDHGILRILKKFSPITSVKTEGR
RDKGFSLEFVGFRVGEPLHSVEECKQRLLTYVAPFYATVRVTDLSTGEMREEEVSLGNYP
IMTENQTFVINGVERVVVSQLVRSPGVYFVEEPTKNIGAKPIYVAHFLPVRGVWLEILLN
LNDETLYARIDRRKKLNLFLVLKTLGYQNDIDILSLFPTYIDVEDDYSLKQAEGVIILEK
VVSKSGEVLAEKGSVLTPTLVEIFREHGIDRIKVANKYIHKTYLKLKERLKMPLEENISE
LRAYMEIYKELRPGEVFRYNAAKSFWNNLYFNPERFELTEVGRYKMNKKLTNTYRKYLVE
IEGRNPKSVENVEYMETSDALTPMDIILVVRMLLEVEKHPETLDTKDHLSNKRVKTVGEL
IGSEFERAFSKSVHQIQEKLATYTSLDKISIPSLINLRNVVASLNSFFATNPLSQFMDQV
NPIAELTHKRRLTAVGPGGLKRERARFEVRDVHHSHYGRMCPIETPEGGNIGLITSLAVY
ATIDKFGFLVTPYRKVVNGRITDEVVYLAADEEENYRIASSTIPRDENGNILQEKVPVRY
LEKVVYVHKNEVDFVDISPKQIVSVTTSLIPFLEHDDANRALMGSNMQRQAVPLIKSEAP
LVGTGMEYPAAIYSGHVVLAKHDGIVKKVDARKIVIHRTDENGTPLYDKKGNPVLDEYTL
LKYVRSNQDTCINQKPIVNVGDFVKKGTPIADGPATDNGELALGKNVLVAFLPWEGYNFE
DAILVSEELLEEETFTSVHIEVYETTARETRVGPEEITAEIPNVSKENLRNLDENGIIRI
GAYVGKQKYFTSQDILVGKVTPKGESDATPEEKIMRSVFGEKGKDVKDSSLRVPHGVEGR
VIGVHVFHKEEVGDLGPGVNTLVRVYLATRKPLEVGDKLAGRHGNKGVVSMILPKEDMPF
LPDGTPVQVVLSPLGVPSRMNIGQVLETSLGWLAKLTNRHFATPVFDGAKEDEILPELYK
VREKLNLHLGDDPENPSGKVILRDGRTGKEFDSPVLVGYMYIMKLIHIARDKIHARATGP
YSLIHQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLNEMLTVKSDDIKGRTEVYKAIMK
GKNLPEPGLPESFKVLVRELKGLALDVRVYDEHGNEIDIEKL
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacttatcaagtgggcaagaggataaggtactccttcggaaaggttgatgagatt
ctcaacgtcccagacctcgtagaaatccagcataaatccttcaaggagttattggaccat
ggtattttgcgtatcctcaagaagttcagccccataacgtcagtgaagaccgagggtaga
agagacaaaggtttcagcctcgaattcgttggatttcgtgtaggtgagcctcttcactcg
gtcgaagagtgtaaacagcgtcttctcacgtatgtcgcaccgttttacgcaacggtgaga
gttactgatttgtcaacaggagaaatgcgcgaagaagaagtaagtcttggcaattatcct
atcatgactgaaaatcaaacgttcgtgataaacggtgttgaaagagttgtcgtcagtcag
ctcgtaagaagcccaggagtctattttgtcgaggaaccaaccaaaaacataggagcaaag
ccgatatatgtagcacacttcctaccagtcagaggtgtgtggcttgaaatattgctcaat
ctcaatgatgaaaccttgtatgcaagaatcgatagaaggaaaaagctgaaccttttcttg
gtcttaaaaacccttggttatcaaaacgatatcgatatcctttctctattcccaacttac
atagacgttgaagatgattactcattgaaacaagcagaaggggttataattcttgaaaaa
gttgtttcaaaatctggagaggtcctcgctgaaaaaggttcagtattaacgcccacactt
gttgagatatttagagaacatgggattgatagaataaaagttgcaaataaatacatacat
aagacctatctgaagcttaaggaaaggctaaaaatgcctcttgaagagaatatcagcgag
cttagggcttacatggaaatatacaaagaactgcgccctggcgaggtgtttagatacaac
gctgcaaaatccttctggaataatctttattttaatcctgaacgcttcgaacttaccgaa
gtcggtaggtacaaaatgaacaaaaaattgacaaacacgtacagaaaataccttgttgaa
atagaaggaagaaatccaaagagtgttgagaatgttgagtacatggagacttccgatgct
cttacaccgatggatataatcttggttgttagaatgctacttgaagttgaaaaacacccg
gaaactcttgatacaaaagaccacctttcaaataaacgggtcaaaacagttggtgaattg
ataggttcagaattcgaaagagcgttctcaaaatctgtccatcaaattcaagaaaaactt
gcaacctatacaagcttagataagatatcgattccaagtttgattaatttgagaaacgtc
gtcgcttcgcttaacagtttctttgcaacgaacccactttcacaatttatggaccaggtc
aacccaatcgctgaattaacacacaaacgaaggcttacagctgtcggacctggcggatta
aagagagaaagggcaaggtttgaagttcgtgacgttcaccactctcactatggaaggatg
tgtccaattgaaacaccagaaggtggtaacataggtcttatcacctctctcgctgtttat
gccacaatcgataaattcggtttccttgtgacaccatacagaaaggttgtcaatggtaga
ataactgacgaagtcgtttatcttgctgcagatgaagaagaaaactacagaattgcgtca
tcaacaataccaagagatgaaaatggtaacatattgcaagaaaaagtcccagttagatat
cttgaaaaagtagtctacgtgcacaaaaacgaagtcgactttgtcgatatatcaccaaaa
caaattgtcagtgttacaacatcactgataccgttcctcgaacatgacgacgctaaccgt
gctttgatgggttctaacatgcaaagacaagcggttccacttatcaaatctgaagctcca
cttgttggaactggtatggaatacccagctgctatctattctggacatgtcgtattggca
aaacacgacggaattgtcaaaaaggtcgatgccagaaaaatagtcatccacagaacagac
gaaaatggcaccccactttatgacaagaaaggaaatccagtactcgatgaatatacactt
ttgaaatacgttaggtcaaaccaagatacctgtatcaatcaaaagcctattgttaatgtt
ggagattttgtaaagaaaggtacaccaattgctgatggtccagcgacagataacggagaa
cttgcactcggtaagaacgtgctcgttgcgttccttccatgggaaggttacaacttcgaa
gacgctatactggtaagcgaagaactactagaagaagaaacgttcacatctgtacacatc
gaagtctatgaaacaacagcaagagaaacaagggttggtccagaggaaatcactgcggaa
ataccaaatgtctcgaaggaaaatttgagaaatctcgatgaaaacggaattatccgaata
ggtgcctacgttggtaaacaaaaatacttcacctcgcaagatatccttgttggtaaggta
acaccaaaaggtgaaagtgatgcaacaccggaagaaaaaattatgagatccgtcttcgga
gaaaaaggtaaagacgtcaaggattcgtcactcagagttccgcacggtgttgaaggtagg
gtcatcggtgtacacgtattccacaaagaagaagtcggagaccttggtcctggtgtgaat
acacttgttcgagtctatcttgcaaccagaaaacctcttgaagttggtgacaaacttgcc
ggtaggcacggtaacaagggtgtcgtatcaatgattcttccaaaagaagacatgccgttc
ctaccagacggaacaccggtccaagtagtcttaagcccattgggtgttccatcacgtatg
aacattggtcaagtgctcgaaacctctcttggttggctcgcaaagttaacaaacagacac
tttgctacacctgttttcgatggtgctaaagaagacgaaatattgccagaactatacaaa
gttcgcgaaaaacttaatttgcaccttggagatgacccagaaaatccatcaggtaaggtt
attctcagagatggaagaacaggtaaggaattcgattcaccggtgctcgttggttacatg
tacattatgaaactcattcacattgcaagggacaaaattcacgcgagggcaacaggacct
tactcattgatacaccaacaaccactcggtggtaaagctcagtttggtggacaaaggttc
ggtgaaatggaagtctgggcacttgaagcatacggtgcttcctacacattgaatgaaatg
cttacagtaaaaagtgacgatatcaagggtagaaccgaagtttacaaagctatcatgaaa
ggtaagaacttaccagaaccaggtctacccgagagcttcaaggtccttgttagagagttg
aaaggtctcgcactcgatgtccgcgtttacgacgagcacggtaatgaaatagatatcgaa
aaactgtaa
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integrated database retrieval system
