Flavobacterium nackdongense: E1750_05105
Help
Entry
E1750_05105 CDS
T06713
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fnk
Flavobacterium nackdongense
Brite
KEGG Orthology (KO) [BR:
fnk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fnk03009
]
E1750_05105 (rlmD)
Enzymes [BR:
fnk01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
E1750_05105 (rlmD)
Ribosome biogenesis [BR:
fnk03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
E1750_05105 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Cons_hypoth95
Methyltransf_25
MTS
TRAM
TRM5-TYW2_MTfase
Methyltransf_15
PrmA
PCMT
Methyltransf_11
Alginate_lyase2
FtsJ
N6_N4_Mtase
UPF0020
Motif
Other DBs
NCBI-ProteinID:
QBN18208
UniProt:
A0A4P6Y8P0
LinkDB
All DBs
Position
1270066..1271478
Genome browser
AA seq
470 aa
AA seq
DB search
MAKKNTDKIVFDHIKVLDAGAKGVSVAKAPDGKVIFIPNVVPGDLVDVQTFKKRKAYYEG
KAVRFHEYSEHRIEPICEHFGVCGGCKWQNMKYSQQLFYKQNEVFNHLQRIGKIALPEFE
PILGSEKQFFYRNKMEFSFSNSRWLTEKEIDSTEDLGNRNALGFHIPKMWDKILDINKCH
LQEDPSNAIRNEIRAFANENNLTFFNPRNHEGLLRTLMMRTASTGEIMVLIQFFENDKAS
RELILDHIYEKFPQITSLQYVVNNKANDTLYDQNIKLYKGRDYILEEMEGLKFSINAKSF
YQTNSDQAYELYKITRDFAGLTGTETVYDLYTGTGTIAQFVSKKAKKVIGVESVPEAIID
AKANAERNNITNCEFYVGDMKVVFNESFIAQHGKPDVIITDPPRDGMHKDVIEQIMKIEP
EKIVYVSCNSATQARDLALMDEKYKVARVRPVDMFPQTHHVENVVLLERR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaaatacagacaagatcgtttttgatcatataaaagtccttgatgcaggt
gcaaaaggcgtatcggtggcaaaagccccagatggaaaagtaatttttattcccaatgtc
gttcctggcgacttggtcgatgtgcaaactttcaaaaagcgcaaggcttattatgaagga
aaagcggtacgatttcacgaatattccgaacacagaatcgaacctatttgcgaacatttt
ggcgtgtgtggcggttgcaaatggcaaaatatgaaatacagccaacaattgttctacaaa
caaaacgaggttttcaatcatttgcaacgcattggaaaaatagcacttcccgagtttgaa
ccgattttaggttccgaaaaacaatttttctacagaaataaaatggaattttcgttttcg
aacagccgttggttgaccgaaaaagaaattgatagcaccgaagatttaggcaaccgaaat
gcgctaggtttccatattccgaagatgtgggacaagattttggatattaataaatgccat
ttgcaggaagatccatcaaatgcgattcgcaacgagattcgggctttcgccaatgaaaat
aatttaacattcttcaacccgagaaaccacgaaggtttgttgagaaccttgatgatgcgg
actgcttcgactggagaaattatggttttgattcagtttttcgaaaatgacaaagccagt
agagaattaattttagatcatatttacgaaaaattcccgcagattacttcgctgcaatat
gtggtgaacaataaagccaacgacactttatacgaccaaaacattaaattgtacaaagga
agagattacattctggaagaaatggaaggtttgaaatttagcattaatgccaaatcattt
taccaaaccaattccgaccaagcctacgaattgtataaaattacacgagattttgctgga
ttgactggtacagaaaccgtttatgatttatataccggaactggaaccattgctcaattc
gtatcgaaaaaagccaaaaaagttattggtgtagaaagcgttcccgaagccattatcgat
gccaaagccaacgcggaacgcaacaatattactaattgtgaattttatgtgggtgatatg
aaagtagttttcaacgaaagttttattgcacaacacggaaaacccgatgtgattatcacg
gatccgccgcgtgacggaatgcacaaagacgtgatcgagcaaattatgaaaattgaacca
gaaaaaatcgtttatgtaagttgcaactcggcgacacaagcgagagatttggctttgatg
gacgaaaaatacaaggtagctcgcgtgcgacccgtagatatgtttccgcaaacgcatcac
gtagaaaatgttgtacttttggagaggagataa
DBGET
integrated database retrieval system
