Flavobacterium nackdongense: E1750_11490
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Entry
E1750_11490 CDS
T06713
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fnk
Flavobacterium nackdongense
Pathway
fnk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fnk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E1750_11490 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fnk03400
]
E1750_11490 (mfd)
Enzymes [BR:
fnk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E1750_11490 (mfd)
DNA repair and recombination proteins [BR:
fnk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E1750_11490 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Zeta_toxin
UB2H
Motif
Other DBs
NCBI-ProteinID:
QBN19393
UniProt:
A0A4P6YG12
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All DBs
Position
2671848..2675240
Genome browser
AA seq
1130 aa
AA seq
DB search
MNNKNLYSVYDNSTKVKQIVSSLQEDNQKIQLNGLIGSSLSFVVQSLFKKAETRGIAKQS
AAKPFLIILNDKEEAAYYLNDLEQMIGEEDVLFYPGSYRRPYQIEDTDNANVLLRAEVLN
RINSRKKPAIIVTYPEALFEKVVTRKELDKNTLKVAVGDQISIDFINEVLFEYEFKRVDF
ITEPGEFSVRGGIVDVFSFSNDNPYRIEFFGNEVDSIRSFDVETQLSIEKQKKITIIPNV
ENKFFQEHRESFLEYINNQTVLFIQDTDLLFSKLDKLFAKATEIFENLNATVNHVAPSQL
FLNQTEFIKKSLDFSVVELSSKPIYKTKKVFDFHIKPQPSFNKQFDLLLNNLNDNHFNGY
KNYLFCSNDAQAKRFHDIFESLDEENSENIRKQYNTIVLPIYQGFIDDENQIAFYTDHQI
FERYHKFSIKSSVSKKQNITLKELTTLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIK
LVYADNDIVYVSIHSLYKIAKYNGKDGTPPKIYKVGSNAWKILKQKTKARVKHIAFNLIQ
LYAKRKLEKGFRFAPDSYLQNELESSFIYEDTPDQVKSTAEVKADMESDRPMDRLVCGDV
GFGKTEVAIRAAFKAVDNSKQVAVLVPTTILAYQHYRTFTERLKDMPVSVGYLNRFRSAK
QKAETLQQLAEGKLDIVIGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVD
TLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIETNVVGFSEETIRDAISYEIQRNG
QVFFINNRIENIKEVAGMIQRLVPDARVGIGHGQMDGKKLEELMLAFMNGEFDVLVATTI
IESGLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTDDARKRI
QALEQFSELGSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIDELKENE
FKDLYENEDSGLEKEYVKDLQIDTDFELLFSDEYINNVTERLSLYNELGNVKNEEELVVF
QNKLIDRFGPMPPRALALMNSIRIKWVATKVGIEKLVLKKGKMIGYFVSDQQSDFYTSKR
FHQVIQFVQKNSNICVMKEKQTPAGLRLLLTFDNVKTTRRALELMEMLGK
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
ttgaataataaaaatctatattcggtttatgacaattcgactaaggtcaaacaaattgtc
agcagtttgcaagaagacaatcaaaaaattcaattgaatggattgataggttcgtcgctt
tcgtttgtagtacaatcgcttttcaaaaaagcggagacccgaggcatagccaaacagagc
gcagctaaaccgtttttgattatcttaaacgacaaggaagaagcggcttattatttgaat
gatttagaacaaatgattggcgaagaagacgtgctgttttatcccggttcgtatcgccgt
ccctaccaaattgaggataccgataatgccaatgtactgcttcgtgccgaagtattaaat
cgcatcaattctcgaaaaaaaccagccattattgtcacttatcccgaagcgcttttcgaa
aaagtagtgactcgaaaggagttagacaagaacactttgaaagtagcggttggcgaccaa
atttcgatagatttcatcaacgaagtcttgtttgaatacgagttcaaaagagtcgatttc
atcacagagcccggcgaattttcggttcgtggcggaattgtcgatgtgttttctttttcg
aatgataatccgtatcgcatcgagttttttggcaatgaagtcgatagcattcgaagcttc
gatgtagaaacacaattgtctatcgaaaagcagaaaaaaatcacgattattcccaatgtc
gagaacaaattctttcaggagcatcgcgaaagtttcttggaatacatcaataatcaaacg
gttttgtttattcaagacaccgatttgcttttctcaaaactggacaaactttttgcgaaa
gcgaccgagattttcgaaaacctgaatgcaaccgtaaaccacgttgcaccaagtcaattg
ttcctgaaccagaccgaattcatcaagaaaagtttggatttttcggttgtcgaattgagt
tcaaaacccatttacaaaacgaaaaaagttttcgattttcacatcaaaccacaaccgtca
ttcaataaacaattcgacttgttgttgaataatttgaatgacaaccatttcaacggctac
aaaaattatttattttgttccaatgatgcccaagccaaaaggtttcacgatattttcgaa
tctttagacgaagaaaactccgagaacatccgcaagcaatacaatacgattgttttgcct
atttatcagggatttatcgacgacgaaaatcaaattgccttttataccgatcaccaaatt
tttgaacggtatcataaatttagcatcaaaagttcggtttcgaagaagcaaaatatcacg
ctaaaagagctcacgacgctgtccgttggtgattatgtaacccatatcgatcacggaatt
ggaaaatttggcggtttgcagaaaatacaagtcgaaggcaaaacccaagaagccatcaag
ctcgtttatgccgataatgatattgtgtatgtgagcatccattcactttacaagattgca
aaatacaacggaaaagacggaacgccgcccaaaatttataaagtaggttcgaatgcttgg
aagattctgaagcaaaaaaccaaggcaagagtcaaacatattgcgttcaacttgattcag
ttgtacgccaaacgaaaattggaaaaaggattccgttttgcgcctgatagctatttgcaa
aatgaattggaaagttccttcatctacgaagacacgcccgatcaagtaaaatcgacggct
gaagtcaaggctgatatggaaagcgaccgaccaatggatcgcctagtttgtggcgatgtt
ggttttgggaaaacggaagttgcgattcgtgccgcgttcaaagcggtggacaattcgaaa
caagttgccgttttggttccaaccacgattttggcgtaccaacattatagaacttttacc
gaaaggttgaaagatatgcccgtttctgtgggttatctgaaccgttttagatctgccaaa
caaaaagcggaaacgctacaacaattagccgaaggaaagcttgacattgttattggcaca
catcaattggtcaacaaaaatgtggttttcaaagatttgggattgttgattgtagacgag
gaacaaaaatttggggtcaacgtcaaagacaaactcaaaaccatcgctgccaatgtcgat
acgctgaccttaaccgcgacacccatcccgagaaccttgcagttttcgttgatggcggcg
cgcgatttatccgtaattacaacacctccgcccaatcgttatcctattgaaacgaacgtg
gttggttttagcgaagaaacgattcgggatgcgatttcgtatgaaattcaacgtaacgga
caggttttctttatcaataaccgaattgaaaacatcaaggaagtagcgggaatgattcaa
cgcttggttcctgatgcgcgagtgggcattggtcacggccaaatggatggtaaaaaactc
gaggaattgatgttggcttttatgaacggtgaattcgatgttttggtagcaaccaccatt
atcgaaagtggattagacgtccccaatgcgaataccattttcatcaataatgcgaataat
tttggactatccgatttgcatcaaatgcggggtcgtgtgggtcgaagcaataagaaagct
ttttgttattttatctgtccaccctattcagcgatgacggatgatgctcgaaaacgaatt
caggcattggagcaattttcggaattgggaagcggtttcaatattgcaatgaaagatttg
gaaattcgtggagcaggagatttattgggaggcgaacaatcaggtttcatcaacgaaata
ggttttgatacttaccagaaaattatgaacgaagccatcgatgaattgaaggaaaacgaa
tttaaggatttgtatgaaaacgaagacagcggactagaaaaagaatatgtgaaagacctg
caaatcgacaccgattttgagttgttgttttcagacgaatacatcaataatgtgacagag
cgtttgagtttgtacaacgaattgggcaatgttaaaaacgaagaagaattggtcgttttt
caaaataaactaattgaccgttttggaccgatgccgccaagagccctggctttgatgaat
agtattcgcatcaaatgggtggctacgaaagttggaatcgagaaattagtgctaaaaaaa
ggcaagatgattggttattttgtgtccgaccaacaatcggatttttatacctcgaaacgc
tttcatcaagtgattcagtttgtgcaaaaaaacagcaacatttgcgtaatgaaagagaaa
caaaccccagcaggattacgccttttattgacttttgataatgtgaaaaccacaagaagg
gctttggaattgatggagatgttggggaagtaa
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