Flavobacterium nackdongense: E1750_16565
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Entry
E1750_16565 CDS
T06713
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fnk
Flavobacterium nackdongense
Pathway
fnk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fnk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E1750_16565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fnk03019
]
E1750_16565
Enzymes [BR:
fnk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E1750_16565
Messenger RNA biogenesis [BR:
fnk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E1750_16565
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
CMS1
Cas3-like_C_2
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
QBN20337
UniProt:
A0A4P6YHJ7
LinkDB
All DBs
Position
complement(3867070..3868323)
Genome browser
AA seq
417 aa
AA seq
DB search
MLFEDLSLSKSIQRAVFEEGYTNPTPIQEQAIPLVLAGRDLIGCAQTGTGKTAAFAIPII
HQLHRIVGSSKKAKEIRALIVTPTRELAVQIGQSFDTYGKYTNLVQLTIFGGVSQVPQVD
ALRKGVDILIATPGRLLDLHKQGFITLDHLHTLVLDEADQMLDMGFINDVKKIVKLTPKN
RQTLLFSATMPIAIRELAEMFLKDPEKVEVSPVSSTAENVEQHVYFVEKTEKRNLLYHLI
KNQNLSDVLVFSRTKHGADNVVKALRKKDIPAEAIHGDKSQNARQRVLDAFKNKEVGVLV
ATDIAARGIDIDQLPYVINFDLPNIPETYVHRIGRTGRAGNEGIAISFCGKDEHQYWKDI
QKLIKVEVKIISDHPYPWHSGNPETAPTAAQKNSNRSGGAHKSRKSNISKQNKKRWY
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttattcgaagatttatcattgtccaaaagtattcaaagagctgtatttgaagaaggc
tacaccaacccaactcccattcaggagcaagctattccgctcgtcctagcgggtagagat
ttaataggttgcgcacaaacgggcaccggaaaaacagcagcatttgccattccaatcatc
catcaattgcatcggattgttggttcatcgaaaaaagccaaagaaatacgtgcgctcatt
gtcactccaacacgtgaattagcggttcagattggacaaagtttcgacacttacggcaag
tatactaatctagttcaactcaccatttttggaggagtttcacaagtgccacaagtagat
gcgcttcgcaaaggggtcgatattttgattgcgacacccggaagattactcgatttgcac
aaacaaggttttataactttagaccatctgcatactttagtccttgacgaagccgaccaa
atgctcgatatgggatttataaacgatgtcaagaaaatcgtaaagcttacgccaaaaaac
agacaaaccttgcttttttcggcaacgatgcccatcgccattcgcgaattggccgaaatg
tttttgaaagatcctgaaaaagtggaagtttctcctgtttcctctactgccgaaaatgtg
gaacaacacgtttattttgtcgaaaaaaccgaaaaaagaaacctactgtatcatttgata
aaaaatcaaaatttatcggatgttctggttttttcgagaaccaaacacggagctgataat
gtggtgaaagccttgcgcaaaaaagatattcctgccgaagccattcacggcgataaatca
caaaatgcgcgacaacgggttttagatgccttcaaaaacaaagaagtgggcgttttggta
gccaccgatattgcagctcgaggtatcgatatcgatcaattgccttatgtcatcaatttt
gacttgcccaatattcccgaaacttacgttcatcgaattgggagaacgggtcgagctgga
aacgaaggaatagccatctctttttgtggcaaagacgaacatcaatattggaaggacatt
caaaaactcatcaaagtcgaggtcaaaataattagtgatcatccttatccttggcattct
ggaaatccagaaacggctccaacagctgcgcagaaaaactcgaatcgtagcggtggtgcg
cacaaatccagaaaatcaaatatttcgaaacaaaacaaaaaacgctggtattag
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