Francisella orientalis LADL 07-285A: M973_04390
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Entry
M973_04390 CDS
T02952
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fnl
Francisella orientalis LADL 07-285A
Pathway
fnl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M973_04390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fnl03400
]
M973_04390
Enzymes [BR:
fnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M973_04390
DNA repair and recombination proteins [BR:
fnl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M973_04390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AHB98300
LinkDB
All DBs
Position
complement(798790..802209)
Genome browser
AA seq
1139 aa
AA seq
DB search
MLNNQISAKDTIVSNAYSSSFSILFNEYLKQNCDFNLIVAEDSQQAYRVYDELKYLNKDS
KIEVFYFPNLEILPYDRFSAAIDIISRRQEILHKLTQNPKNTLVITSISNTLRKLPPAKF
IKEHSFILKTGDSLDITKQKVLLTEAGYTLVNNVFEKGEFSIRGSIIDIFPVGSKVAFRI
DLFDDEVDTIKELDIETQRSGKEIKSINIMPSHELIYNSQNTSLALEKLKILCGDQTQNS
TIATYIKNNEYFSGIEFYLPLFYSELISLFDYLPKSANIHLIDNISNSIEAFSEEVKYRY
NELKHDIDRPVLPYQELFYSQKEVKDLYEKHQHIKWYQQPKSKSKTLNIDHLEKISANYK
LANPFRDLQKLIDSSNFDKVIFSTDSNGRGEILLEHLNKLQLNIIIAKSFDDALKIKDKF
CLIISPFQEGVIIDKKIILITESDLFPEHIQNSSKISEYDHHPTIDLKDLTDLKHGIHVV
HIDHGIGRYEGLESIELNGKKDEFILLRYANDAKIYVPITSLNLISIYNSSITEKITLNK
LSSDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETPD
QLLAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQ
HYNSFKDRFANTDVNIEVITRSKTAKAQEELFDNLKKGTVDIIIGTHKLISSKIYFNNLG
LLIIDEEHRFGVAQKEKLKALKAEIDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRL
SVKTFVKEYDNNIIREAVSRETIRGGQIFYLYNKIDTIQKKKEILQELFPRLRIAIAHGQ
MSEKEIQKIMFDFKHNKYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVG
RSHHQAYAYMLIPSESSITKDAIKRLEAIGSTDSLGGGFTLANHDLEIRGAGEILGQEQS
GNIDGIGLNLYMDLLDKTIANLKAGKELNIEDVINLTVCEVELNIPTLIPDYYISDVNTR
LNIYKRISKADHKELVNIKIELIDRFGRLPVEVLYLLKVAHIKIDAISLGIGQIKMFATS
GKINFANISKFEPQKLIKLIQAQPTDFRITKEQDLLITKSTKTPEQRIVFIESFLKNIA
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacaatcaaatatctgcaaaagatactattgtgtctaatgcttatagttcttct
tttagcattttgtttaacgaatatcttaaacaaaattgcgactttaatctaatagttgct
gaagactctcaacaagcatatagagtttatgatgaattaaagtatctaaataaagactca
aaaatagaagtattctattttcctaacttagaaatactaccttatgatagattttctgca
gcaatagacattatctcaagaagacaagaaatattgcataaacttacacagaatcctaaa
aacactctagtaataacaagtatttcaaatacattaagaaaacttcctcctgccaagttt
atcaaagaacatagtttcatacttaagacaggcgatagcttagacataactaaacaaaaa
gtattactaaccgaagctggatatactttagtaaacaatgtttttgaaaaaggtgaattt
agtatccgtggtagtattatcgatatttttccagttggatcaaaagtagcttttagaatt
gatctttttgatgatgaagttgatacaatcaaagagttagatatagaaactcaacgctct
ggcaaagaaataaaatctataaatattatgccttcacatgagctgatttataattcacaa
aatacttctttagcattagaaaaactcaaaatactatgtggagatcaaacacagaactca
actattgcaacatatataaaaaataatgaatactttagtggtattgagttctatttacca
ttattttactctgaacttattagtctatttgactacttaccaaagtctgcaaatatccat
cttattgataatattagcaactcaattgaagcattctcagaagaggttaaatatagatat
aatgagttaaaacatgatattgatagacctgttttaccatatcaagaacttttttattca
caaaaagaagtcaaagatctgtatgaaaaacatcaacatatcaaatggtaccaacaacca
aaatctaagtctaaaactttaaatatagatcatctagaaaaaatctcagcaaactataaa
ttagctaatccttttagggatttacaaaaattaatagatagctctaattttgataaagtt
atattttcaactgattcgaatggacgtggtgagatacttttagagcatttgaataagtta
cagttaaatataataattgcaaaaagttttgacgatgctcttaaaataaaagataaattt
tgcttaattatctcaccttttcaagaaggtgtaataattgataagaaaatcatattaatt
actgaatcagatctttttcctgagcatattcaaaattcttctaaaatatcagaatatgat
catcaccctactattgaccttaaagatctgacagatctaaaacacggaatacatgtagtc
catattgatcatggtattggcagatacgaaggcttagaaagtattgaattaaatggtaaa
aaagatgagtttatacttctaagatatgcaaatgatgcaaaaatttatgtgccaatcact
tcattaaatctaatttctatttataactcttctattactgaaaaaataacattaaataaa
cttagttcagataaatggaaaaagcaaaaagaaaagactatcaaaaagattatcgatgtt
gctgcaaatctcttagagatatatgcaaaaagagagatgcgacaaggattcagcaattct
ttagatgaagaagaatatctacgattctgtgcagattttccatatgaagagactcctgat
caactcttagcgataaacgatgtctttaaagatatgatatctgctaagccaatggacaga
cttatttgtggtgatgttggttttggaaaaacagaaattgcgatgcgagcagcatttcta
gcaactcaaaatcaaaaacaagtagcaattttagtacctacaactattttagctcaacaa
cactacaatagttttaaagacaggtttgctaatactgatgtaaatatagaggttataact
cgttcaaaaacagcaaaagcacaagaagagctctttgataatctcaaaaaaggtacagtt
gatataataattggtacacataagcttatatcctcaaaaatctactttaataacttaggc
ttattaattattgatgaagagcatcgcttcggtgtcgcgcaaaaagaaaaattaaaagcc
cttaaagctgaaatagatattctgacaatgtcagcaactcctattccacgtagtttaagc
atggcattctcagcacttcgtgatctatcaattattgcatctccccctgctaaacgttta
tctgtaaaaacatttgttaaggaatatgataataatataatccgtgaagctgtaagtcgt
gaaaccattcgtggtggacaaattttctatctttataataagattgacactattcaaaag
aaaaaagaaattctccaagaactattccctcggttgagaatagctattgctcatggtcag
atgagtgaaaaagaaattcaaaagataatgtttgactttaaacataataaatatcatata
ttactttgtaccacaattattgaaactggtattgatattccaaatgctaatactttaatt
atcgaagatgctaataatctaggtttagcacaactacatcaattaagaggtagagttgga
cgctcccaccatcaagcttacgcatatatgctaattcctagtgaaagtagtattacaaaa
gatgctataaaaagattagaggcaattggtagcactgattcacttggaggtggctttaca
ctagcaaaccatgatttagaaattcgtggagctggagagattcttggacaagaacaaagt
ggtaatattgatggtataggtctaaatctatatatggatctcttagataaaacgattgct
aatcttaaagctggaaaggagctgaatattgaagatgtcattaacttaacagtttgtgaa
gttgaacttaatattccaacactaattcctgactactatattagtgatgtaaatactagg
ttaaacatttataaacgaatttcaaaagccgatcataaagaattagtaaatataaaaatt
gaacttattgatcgttttggtaggctacctgttgaagtgttatatcttttaaaagttgct
cacataaaaattgatgctataagtttaggtattggacaaataaagatgtttgctacatct
ggtaagattaactttgctaatatatctaaattcgagcctcaaaagctaataaagctaatt
caagctcaacctactgactttagaatcacaaaagaacaagatttacttattacaaaaagc
acaaaaactcctgaacaaagaatagtgtttatagagagttttttgaaaaacatagcctaa
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