Francisella orientalis LADL 07-285A: M973_04895
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Entry
M973_04895 CDS
T02952
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fnl
Francisella orientalis LADL 07-285A
Pathway
fnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M973_04895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fnl03019
]
M973_04895
03009 Ribosome biogenesis [BR:
fnl03009
]
M973_04895
Enzymes [BR:
fnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M973_04895
Messenger RNA biogenesis [BR:
fnl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M973_04895
Ribosome biogenesis [BR:
fnl03009
]
Prokaryotic type
rRNA helicases
M973_04895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
AAA_30
SNF2-rel_dom
CMS1
Utp25_C
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AHB98367
LinkDB
All DBs
Position
881795..883546
Genome browser
AA seq
583 aa
AA seq
DB search
MNSETKKDFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAA
FALPLINNMDLESRDRAPQVLVLAPTRELAIQVAEQFEAFAKNIPNLNVVCIYGGQEYGS
QIRALKQGIKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHV
SDECQRLLFSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALD
RLLEVEETDGVIIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSD
VLVATDVVARGIDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGTSISLVPLKEMRFL
RILERFTGSPMQEVFMPSAKDLAQSRIDHFKTRVASALDKNKSLDNYKEIITSIRDELEL
DSDSEELLAVLTLLAQGKKSFFPREIQARDDRPQRDRNLRGNSRDGRRNDRFEHRGDRND
RNSRSDRSDKFERSDRSDRKPRRAVNIDLTTYKLEVGRDNDVQPRNIVGAIANEGNIDSK
HICNISIQKDHTLVDLPANLSPKVISHLRNVWVAGKKLNLTAQ
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgaaactaaaaaagattttagtcagcttgggctgaaccaagatattatagat
actgttataaaattaggatatgaaaatccaacaccaattcaacagtatgctattccatat
atcttatcgggtagagatgtgcttggtcaagcgcaaacgggtacaggtaaaacagcggct
ttcgcattacctttaataaacaatatggatttagaatctagagatagagctccacaagtt
ctggtactagctccgacaagagagttagctatacaagtagcagagcaatttgaagctttt
gctaaaaatataccgaacctaaatgttgtatgtatctatggtggtcaagaatatggttct
caaataagagcacttaagcaaggtataaaagttgtagttggtacgactggtcgtgtaatg
gatcatatcgaaaaaggtacattacagctggataatctaagagcattagtattagatgaa
gctgatgagatgctgagaatgggctttattgatgacgttagatatgttctaagtcatgta
tcagatgagtgtcaaagattacttttctcagcgactattcctactgatatagcagatatt
attcaagaatatctaagaaatccttgtaagatacaagtaaaagcaaaaacaaaaactgca
aatactgtgacacaaaagttcatagtgattaaaggttttagaaagatagatgcgttagat
agattgcttgaagttgaagaaactgatggtgttattatctttgttaaaactaagacaagc
actattgaagtagctgataatctaaaagcccttggttatagagtagcggctattaatgga
gatatgcaacaatctcaacgtgaatatatagttgaccaatttagaagcgctaaatctgat
gttttagtagctacagatgttgttgctagaggtatagatcttgagcgtattagtcatgta
attaactatgatatgcctaatgattctgatacgtatgtacatagaatcggtcgtacaggt
agggctggacgtgagggtacttcaatttctctagttcctttgaaagaaatgagatttctg
cgtattttagagagatttacaggctctccaatgcaagaagtatttatgccaagtgcaaaa
gatttagcacaaagcagaatagatcatttcaaaactcgagtagcttcggcattagataaa
aataaatctctagataattataaagagattattacaagtatacgtgatgagctagagtta
gactcagactcagaagaacttttagctgtacttacattattagctcaaggtaagaaatca
ttcttcccgagagaaatacaagctagagatgatagacctcaaagagatagaaatttaaga
ggcaactctagagatggacgcagaaatgatagatttgagcatagaggcgatcgtaatgat
agaaatagtcgttctgatagatctgataaatttgagagatcagataggtctgatagaaaa
cctcgtagagctgtaaatattgatttgactacatataagcttgaagttggtcgtgataac
gatgttcagccaagaaatatagtcggtgctatagctaatgaaggaaatattgatagtaag
catatctgtaatatatctatccaaaaagatcatacattagtagatttaccagctaactta
tctccaaaggttataagtcatctgagaaatgtttgggttgcgggcaaaaaattaaatctt
acagctcaataa
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