Francisella orientalis LADL 07-285A: M973_07200
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Entry
M973_07200 CDS
T02952
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fnl
Francisella orientalis LADL 07-285A
Pathway
fnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M973_07200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fnl03019
]
M973_07200
03009 Ribosome biogenesis [BR:
fnl03009
]
M973_07200
Enzymes [BR:
fnl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
M973_07200
Messenger RNA biogenesis [BR:
fnl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M973_07200
Ribosome biogenesis [BR:
fnl03009
]
Prokaryotic type
rRNA processing factors
M973_07200
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DnaJ_CXXCXGXG
Flu_C_NS1
Motif
Other DBs
NCBI-ProteinID:
AHB98627
LinkDB
All DBs
Position
1292027..1294696
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AA seq
889 aa
AA seq
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MKKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNY
GEEKNGFLPFKEVSEYYLKDVPNGENIAHLLSEGQELIVQIDKEERGDKGAALTTFITLA
GSYMVLLPNNADGGGISRRVEGEDRERLKKYLKDLNIPKNMSVIARTACVECSFEELKHD
FDTLVELWDSIFKAYHRIKKPALLHKESDIIVRTVRDHLKEDVKEIIVDSKECFEDVKRQ
LGLLRQSFDINKVKLYNEELPIFAQFGIDQQIENAYKRKIRLPSGGSIVIDTTEALVAID
VNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLIIVDFIDMAFYPNRKQVEEKL
MEALQQDRARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHGFIKTTQATALTI
LRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISEVKVMLIPNFNMESPKF
QMQRIWGTGYKSNRTSSDLIEDVFNVEIPKAGKKKIAAVELTKPTSNDQNLDAKEDKPQE
NKIIDANTTQDNKRESNTKQESKKKGFFSKLLTKLTGSTEDIAAENEKPQNKQNYNKDNA
QKPQKSQDKGPQKGNNQRDDRKGNNNNNDRNDNKNNNKGQKPPVQKSQDNREERDNGQRN
DRRNNDNRNDRNKNKSGNDKFDKKSNNRNNSRSNNLNLNNAEEVVDITQLKYQNQIAEKT
DNIKKVISKNPEEFVSLMVKDVLENYDSLKDDGATKVATQEKAKTNKYLKFDTVSVDKEI
NILKEAARQAEETAKLENIEAESNSTHEEIKETIEIVDEAVVKEQQPKKAKLDKDDKASK
QNNAKKDKAKTVKNNKKEKTVEKVTKQNQPELEYISYSAALDFESQSII
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatactaataaatagtaaaagtagtgaagaaacaagaattgctactttagat
aacggaaaacttattgacttagatatcgagaatgttgatagagaacaaaaaaaagctaat
atttataaaggctacatttctagaatcgaacctagtttaaatgcgatatttgtcaattat
ggtgaagaaaagaacggctttctaccgttcaaagaagtttctgaatattatctaaaagac
gtaccaaatggtgagaatattgcgcatcttctttctgagggtcaagagttaatagttcaa
atcgacaaagaggagcgtggtgataaaggtgctgctttaactacatttattacacttgct
ggctcatatatggttttactaccaaacaatgcagatggtggtggtatttcacgtcgtgta
gaaggtgaagatagagaaagactgaaaaagtatttaaaggatctaaatattcctaaaaac
atgagcgtaattgctagaacagcttgtgttgagtgctcttttgaagagttaaaacatgat
ttcgacactctagttgagttatgggattcaatattcaaggcttaccatagaattaaaaag
cctgccctacttcacaaagagagtgacataattgtcagaacagttagagatcatctaaaa
gaagacgtcaaagaaattattgtagactctaaagaatgctttgaagatgttaaaagacaa
ctaggtctacttagacaaagttttgatataaacaaagtaaagttatacaacgaagaacta
ccaatatttgctcaatttggcatagaccaacagatagaaaatgcttacaaaagaaaaatt
agattaccttctggtggatctatagtaattgacacaacagaagctttagttgccattgat
gttaactcatctcgcgctaacaaagctgaagatgttgaaacaacagcttttaaaacaaac
ttagaagctgctgaagaagttgctcgtcaacttagaattagagatcttggtggtcttatt
attgttgattttattgatatggcattctatccaaatagaaagcaggttgaagaaaagcta
atggaagcgcttcaacaagatagagcacgcatccagatgtcacgtatatccaaacttgga
cttgtcgaaatatctagacaacgtttaagttcatcaattaatgaaagtgtaatgcaaaag
tgccctcgttgtgatggtcatggattcattaaaactactcaagctactgcgcttactatt
ttacgcaaaatcagagcagaagctatcaaagaagatacaaatgagatacgtgttcaagta
ccagttgatatagctgcatatatactaaatgagaaaagagatagtatcgttgaaatcgaa
agaatttctgaagtcaaagttatgctaattcctaacttcaacatggaatctccaaagttt
caaatgcaaagaatttggggtacaggctacaaatcaaatcgtactagctctgacttaata
gaagatgtatttaacgttgaaatccctaaagcaggaaaaaagaaaattgctgcagttgag
ctaaccaaaccaacgtctaacgatcaaaacttagatgctaaagaagacaagcctcaagaa
aataagatcattgatgctaatactactcaagacaataaaagagaaagtaatacaaaacaa
gaatcaaagaagaaaggcttctttagcaaattattaactaagcttacaggtagtactgaa
gatatcgctgctgagaatgagaaacctcaaaataagcagaactacaataaagacaatgct
caaaaacctcaaaagtctcaagataaaggacctcaaaaaggaaataatcagcgtgacgat
cgtaaaggcaataacaataataatgatcgtaacgataacaaaaataataataaaggtcaa
aaacctccagtccaaaagtctcaagacaatagagaagaaagagataatggccaacgtaac
gatcgtagaaataatgataacagaaatgatcgtaacaaaaataaatcaggtaatgataaa
tttgataaaaaatcaaacaatcgtaacaacagcagaagtaataatctaaatcttaataat
gctgaagaggttgtagatattactcagcttaaataccagaatcaaatagcagaaaaaaca
gataacattaagaaggtaatatctaaaaaccctgaagagtttgtctctcttatggttaaa
gatgttttagaaaactatgatagcttgaaagatgatggagctacaaaagttgctacccaa
gagaaagcaaaaactaataaatacttaaaatttgatactgtttcagtagataaagaaata
aatattcttaaagaagctgctagacaagctgaagaaactgcaaaacttgaaaatatagaa
gcagaaagcaatagtactcatgaagaaataaaagaaaccattgaaatagtagatgaagct
gttgttaaagaacaacaacctaaaaaagctaaattagataaagatgataaagcatctaaa
caaaataatgctaaaaaagacaaggctaaaactgttaaaaataacaagaaagaaaagaca
gtagaaaaggtaactaaacaaaatcaacctgaactagaatatataagctattctgctgct
cttgattttgaatctcagtcaataatctga
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