Francisella orientalis LADL 07-285A: M973_08515
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Entry
M973_08515 CDS
T02952
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fnl
Francisella orientalis LADL 07-285A
Pathway
fnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M973_08515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fnl03019
]
M973_08515
03016 Transfer RNA biogenesis [BR:
fnl03016
]
M973_08515
Enzymes [BR:
fnl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M973_08515
Messenger RNA biogenesis [BR:
fnl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M973_08515
Transfer RNA biogenesis [BR:
fnl03016
]
Prokaryotic type
tRNA degradation factors
M973_08515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
RNase_II_C_S1
Ras
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
AHB98812
LinkDB
All DBs
Position
complement(1548411..1550702)
Genome browser
AA seq
763 aa
AA seq
DB search
MSKYNIHNDPNKDIEAQKYENPIPSREVILNYIGDTNIPVSIENIANALEIFKKNLFDGL
VNRLGAMVRDGQLEKDRSYYSLPEIAPIYITSKVTADRDSRLELFSHTLNTKVGIVSHQA
KMVMVGDEVTAKVLGLNKRSRIDAEIQTIVSRAQKTITGYYYKSFDCDFVKPISKSMTSD
IVLLPPKQKIEHNSLIEAEIIVYPSVSSTAVAKFKQEVEAVSLVKEAMMMATQKYDLIEQ
WSKKTLRYLDNISDDVIVGNRVDLRSENFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAI
ADVSNYVEKDSSLDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLKPNEDRYSLVCEMNI
SKEGKLSRYKFYSAVINSKARLTYTEVSKLIERKQNTIVEKTPELVPNIFDLYELYKVLH
QARQERGAIDFDTVETQIILNEHNHIESIVPRHRNDAHRLIEECMLVANVVAAKFTIKHK
KTSPFRVHSEPKEDRMETLKKYLGKHGIHLAYGKNGKVTPKALAEMLESIRERPDYDDIQ
MMTLRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSIIGEYEHGGADY
KPSELANICENASDQERNADGASKQVENWLKCYFMQDYIDHVLDAQVKHVNGLGLFAELK
DMYIEGLIHVSAIPGDYYIYDEAKDILIGKRTHKVYNIGQDITVRVVRADLERIHIDFEL
YDPRKPHADKNTDKLLAKKSKKPKKAKKKRARRRKKTKTKAAQ
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaatataatatacataatgatcctaataaggatattgaagcacaaaaatacgag
aatccgattccaagtagagaagtaatcctaaactatataggagatactaatatacctgtt
agtatagaaaatatagcaaatgctttagagatttttaaaaaaaatctttttgatgggctt
gtaaatcgtttaggtgcgatggttagagatggtcagttagaaaaagatagatcatactat
agtctaccagaaatagcaccaatatatatcacatctaaagtgacagctgatagagattct
cgcttagagctgtttagtcacactctaaatacgaaggttggtatagtatctcatcaagca
aaaatggtaatggttggtgatgaagtaactgcaaaagtactaggacttaacaaacgcagt
cgtatagatgcagagattcaaacaatagtttcaagagctcaaaaaactatcacaggatac
tactataagagttttgattgtgactttgttaagccgataagtaagagcatgacaagtgat
atagtgctattaccgccaaagcaaaaaatagaacataactctttaatcgaagctgagata
attgtataccctagtgtaagtagtacagccgttgctaaatttaaacaggaggtcgaagca
gtatctctagttaaagaagcaatgatgatggcaacacagaaatatgatttaattgagcag
tggagtaaaaaaactttacgctatttagataatatttctgatgatgtgattgttggtaat
agagttgatttgcgtagtgagaatttcgtaactattgatggtgaagatgccaaagatttc
gatgatgctgtttatgcacataagactaaaagtggtagttggaagttatatgtggcgatt
gcagatgtatcaaattatgttgaaaaagattctagcttagatttagatgctaagcgtcgt
tcaacttctgtttattttccaggatatgttattcctatgctaccggagaagctatcaaat
ggattgtgttctttgaaacctaatgaagataggtattctttagtttgtgagatgaatatt
agtaaagaaggtaagctatctagatataagttctattctgctgtcataaactcaaaggcg
cgtttgacttatacagaagtctcaaagcttatagagaggaaacaaaacacaatagttgaa
aaaactcctgaattggtgcctaatatctttgatttgtatgagttatataaagtacttcat
caagctaggcaagaacgaggtgctatagactttgatacagttgaaacacaaataatactt
aatgagcataatcatattgaatcaatagtgccaagacatcgtaatgatgcgcataggcta
atagaagagtgtatgcttgtagcaaatgttgtagcagctaaatttactattaagcataaa
aaaacatcgccatttagagttcatagtgagcctaaagaagataggatggaaactctcaag
aagtatcttgggaagcatggtatacatcttgcttatggtaaaaatggaaaagttacacca
aaagctttagcagaaatgcttgagagtattagagagcgtcctgactatgatgatatccag
atgatgactttacgtagtatgaatcaagcagtgtacagtataaataatgatggacacttt
gggttagcatatagtgagtatacacatttcacatcaccaattcgtagatatccagatcta
gtagtacatagaataatcaaatcaattattggtgagtatgagcatggtggagctgattat
aaaccttctgaattagcaaatatttgtgaaaatgcttccgatcaagagcgaaatgctgat
ggcgcatcaaaacaagttgagaactggttaaaatgctacttcatgcaagactatatcgat
catgttttggatgctcaagttaagcatgttaatggcttaggtttatttgctgagctaaaa
gatatgtatatagaaggcttgatacatgtttcggccattccaggtgattattatatttat
gatgaagcaaaagatatactaattggtaagaggactcataaggtttataatattggtcaa
gatatcacagtaagagttgtcagagctgatttggaaagaattcatatagattttgagtta
tatgatccacgtaagcctcacgcagataaaaataccgataaattacttgctaagaagtct
aaaaaaccaaaaaaagccaagaaaaaaagagctagacgtagaaaaaagacaaaaacaaaa
gcagctcaataa
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