Francisella noatunensis subsp. noatunensis: FSC774_06005
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Entry
FSC774_06005 CDS
T07065
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
fnn
Francisella noatunensis subsp. noatunensis
Brite
KEGG Orthology (KO) [BR:
fnn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fnn03019
]
FSC774_06005 (hrpA)
Enzymes [BR:
fnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FSC774_06005 (hrpA)
Messenger RNA biogenesis [BR:
fnn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FSC774_06005 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
NTPase_1
HA2_N
RsgA_GTPase
T2SSE
nSTAND3
ABC_tran
Flavi_DEAD
NACHT
ResIII
Motif
Other DBs
NCBI-ProteinID:
QOG55019
LinkDB
All DBs
Position
complement(1179998..1183798)
Genome browser
AA seq
1266 aa
AA seq
DB search
MNTNKTLFTDYLNQIPSKLRGKFISAINNNKLPRQQLLTDLQLLAEQTSQKVLPKITYSD
LPVAEKVNDIKKLIQDNQVIVVAGETGSGKSTQLPKICLDLGLGKRGLIGHTQPRRLAAR
SIASRVATEIADQSKVSFKIRFSDQTSENTLIKVMTDGVLLSEIKNDRFLSQYEVIIIDE
AHERSLNIDFLLGCIKKILPYRPDLKVIITSATIDHQKFIDYFQNAKDITISGRTYPVEI
RYQNDEDFEEFSLQERILYALDELGRGDVLVFLPTERDIHETLAYLNKQDLRFTEVLPLF
SRLSNKDQNKIFNPEGSVRRVILATNVAETSLTVPRIKYVIDSGLARISRYSYRTKVQRL
PIEKISQASANQRAGRCGRLSAGVCIRLYSEEDFNNRKEYTDPEILRTNLASVILQMLFL
KLGSIQDFPFIDSPDSRFVKDGFKLLFELRAISELNYSKPKITDDGMKMAIMPLDPKLAK
IVIEGHRQNTLREIVSIVSFLSVQDPRERPLNFQQKADEKHAVDKDKSSDFIAILNLANR
LNSDLKGLSNREKKEYFKKNFISPVRFNEWNDIYRQIVEVIHQFKWKLSSNEKLNYENLH
KAIASGFLSNIGFNYENAEYLGARGLKFFIFPGSSQFKTKPKWLLASEIVETTKTYARNV
AKIEPEWLESLAEHLIKKHYDEPIWSKKRRAVVVNERVTLYGLEIVSKRSVQYAKINPQE
AREIFIRDALVNGDFDSKEYFYQQNLQLINQVEELENKLRRKDILVDEEVMFAHYDSFIP
DDVCSGATFDKWLKSVTKEQQKGFIFDIENLMQHDAKEITQQKFPDVLTIADMHLPLEYH
FDPLDERDGATVTVPIVFINDINPAVLEWGVYGFLYDKIVALLRALPKNIRKNCVPVPTY
AQAIFESIDFDKDRYSPLKSIIAKHITRIVGFVVDETVWQNEELEKHLVLNVKVVDEHGK
TLAVGKDINILKQKLKNLVAKPRQEIDETVYYDWDFADIAMTSQVKEYGIIVKVYNCLEE
HKDGVKLSYKATFDEAKLCMREALKRLIKLRLQNQLSKNIKSNDLSSLSMSLKISDSKDS
VIDKAIDLSFFDNIELPYTKVDFENFYTLGMQKFASNKIKVEALLLEITKFKSQLEKKLN
VKKIPLNFIELFTDVRNELNELFTDDYMSQPVEFLQRYKYYLQASENRLEKAKLNLQRDR
GYQIEVDELRSKLAKKITANHIDKNEFAVVKIYNLIQELWISWYLQNVKTIESVSYKKIL
AYINEI
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaataaaactttatttactgattatcttaatcagatacctagcaaacttcgt
ggcaagtttatatcagccattaataacaataagttaccaagacagcagttactgactgat
ttacagcttttggcggagcaaactagccaaaaggtcttgcctaagataacctactcggat
cttcctgttgctgagaaagtcaatgatataaaaaagcttatacaggataatcaagttatc
gttgtagcaggagagacaggttctggtaagtcaactcagctgcctaagatatgtcttgat
ttggggctaggcaaacgcggattaattggacatactcagccgagaaggcttgcagctaga
tctattgctagtagagttgctactgagattgctgatcaatcaaaagtatcttttaaaata
cgcttttcagatcaaacttctgaaaatactttaatcaaagtgatgacagatggggtgcta
ttatctgaaatcaagaatgataggtttttatcacagtatgaggttattattattgatgag
gctcatgaaagaagtttaaatattgactttctacttggctgtataaaaaagatattacca
tatagacctgatttaaaagtaatcattacctcggcaactatagatcatcagaagtttata
gattattttcaaaatgctaaagatattacaattagtggtagaacatatcctgttgaaatc
cgttatcaaaatgatgaggattttgaagagttttcattgcaggaaagaatattgtatgct
cttgatgaacttggcaggggagatgttttagtctttttgcctacagaaagagatatccat
gaaacattagcatatttgaataaacaagatcttagatttacagaggttttacctttgttt
tcgagattatcaaataaagatcaaaacaaaatattcaatccagaaggctctgtacgtagg
gttattttagcaactaatgtcgctgaaacatctctaacagtgccgcgcataaaatatgtg
atagactcaggcttagcgcgaataagtagatacagctatcgcactaaggtacaacgccta
ccgatagagaaaatatctcaagcaagtgctaatcaaagagccggtcgctgtggtagatta
tcagcaggtgtttgcatacgtttatatagtgaagaggattttaataatcgtaaagaatat
accgatccagagattttacgtactaatttagcatctgttattttgcagatgttgttttta
aagttaggaagtatccaagattttccatttatagactcgcctgattcaagatttgttaaa
gatggctttaagcttttgtttgaattacgagctatctccgagcttaattattcaaagcct
aaaattactgatgatggaatgaaaatggcaattatgcctttagatcctaagttagcaaaa
atagttatagaaggtcatagacaaaatacacttagagaaatcgtttcaattgttagcttt
ttaagtgtacaggacccgcgtgagagacctctgaattttcagcaaaaagctgatgaaaaa
catgctgttgataaagataaatcttctgattttatagcgattttaaatttggcaaataga
ctaaattctgatttaaaaggcttatcaaatagagagaaaaaagaatattttaaaaagaat
tttatttcaccagttagatttaatgaatggaatgatatctatcgacaaattgttgaagtt
attcaccagtttaaatggaagttatcgtcaaatgaaaagcttaactatgaaaacctgcac
aaagctatagccagcggttttttgagtaacatcggatttaattatgaaaatgctgaatat
ctaggagctaggggacttaagttttttatatttcctggatcttctcagtttaagacaaag
ccaaaatggttacttgcatcggagatagttgaaactaccaagacatacgctcgtaatgtt
gcaaaaatagagcctgaatggttagagagcttagcagagcatcttatcaaaaaacactat
gatgagcctatttggagcaaaaagcgcagagctgttgtagtcaatgaaagagtaactctt
tatggcttagagatagtttcaaaaagatctgtacaatacgctaagataaatcctcaagag
gctagagaaatattcattcgagatgctcttgtaaacggtgactttgattctaaagagtac
ttttatcagcaaaatctccagcttataaaccaagttgaagaacttgaaaataaattacgc
cgaaaagatatcttggtcgatgaagaagtaatgtttgctcattatgatagctttatccca
gatgatgtttgtagtggcgcaacatttgataaatggttaaagtcagttacaaaagaacag
caaaagggctttatctttgatatagaaaatctaatgcagcatgatgctaaagaaatcacg
caacagaagtttcctgatgtcttaactatcgcagatatgcacttaccattagaatatcat
tttgatccactagatgagagagatggtgcaaccgttacagtaccaatagttttcatcaat
gatataaatcctgctgttttagagtggggggtgtatggttttttgtatgataagattgtc
gctttattacgtgctttgccaaaaaatattcgcaaaaattgtgtgccagtgccaacttat
gctcaggctatatttgagtcaatagattttgataaggatagatactctcctttgaagtct
attattgccaaacatattacgcgaatagttggttttgtggttgatgagacagtatggcaa
aatgaggagctggagaagcatcttgtgttgaatgtaaaagttgttgatgagcatggtaaa
acactagcggttggtaaggatattaatatattaaagcaaaagctcaaaaaccttgttgct
aaaccaagacaagaaattgatgagacggtttattatgattgggattttgcagatattgcc
atgactagtcaagtcaaagagtacggcataatagtcaaagtctataactgtctagaagag
cataaagatggtgtgaagttatcttataaggcaacatttgatgaggctaagctatgcatg
cgagaggctctgaaaaggctaatcaagctacgcttacaaaatcagttatcaaaaaatatc
aaaagtaatgatctatcaagcttatcaatgtcactaaaaataagtgactcaaaagatagt
gtgattgataaagctatagatttgagtttttttgataatattgaattgccatatactaaa
gtagattttgaaaacttctatactttaggaatgcaaaaatttgcttcaaataaaatcaaa
gttgaagcattgcttttagaaataacaaagtttaaatcgcagcttgaaaaaaagcttaat
gttaaaaaaataccacttaattttattgaactttttacagatgttagaaatgagcttaat
gagctttttacagatgattatatgtctcaacctgtagagtttttacaaaggtataaatac
tatctccaagcttcggagaataggttagaaaaagcaaaattaaatctccaaagagatcga
ggatatcaaatagaagttgatgaactaagatctaaattagctaaaaaaataacagctaat
catattgataaaaatgagtttgctgttgtaaaaatttataatctaatacaagagctgtgg
atatcgtggtatttgcagaatgttaagaccatcgaatcagtatcatataagaaaatttta
gcttacataaatgagatatag
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integrated database retrieval system
