Francisella noatunensis subsp. noatunensis: FSC774_08000
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Entry
FSC774_08000 CDS
T07065
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fnn
Francisella noatunensis subsp. noatunensis
Pathway
fnn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fnn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FSC774_08000 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fnn03021
]
FSC774_08000 (rpoC)
03400 DNA repair and recombination proteins [BR:
fnn03400
]
FSC774_08000 (rpoC)
Enzymes [BR:
fnn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FSC774_08000 (rpoC)
Transcription machinery [BR:
fnn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FSC774_08000 (rpoC)
DNA repair and recombination proteins [BR:
fnn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FSC774_08000 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QOG55305
LinkDB
All DBs
Position
complement(1559038..1563288)
Genome browser
AA seq
1416 aa
AA seq
DB search
MNNGILHQNYNSKKFDIIKISLASPEVIRSWSHGEVKKPETINYRTFKPERDGLFCAKIF
GPIKDYECLCGKYKRLKHRGVVCERCGVEVEQAKVRRERMGHIDLVCPVVHIWYLKSLPS
RIGLFLDMPLKNVEKVLYFESYIVTDPGMTPLEKKQLLTDDEYAEALENYGYEFEASMGA
EAIRDLLADTDLETEIESLQAEYEESKSTAKKEKAIKRLRLLETFQASGNKPEWMVMTVL
PVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKKLLDLSAPDIIVRNEKRMLQEA
VDALLDNGRRGRAVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLR
LHECGLPKKMALELFKPFVYSKLRLGGYATTIKQAKRMVELEEAVVWDILEVVINEHPVL
LNRAPTLHRLGIQAFEPRLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLEARV
LMMSTNNILSPASGQPIITPTQDIVLGLYYITREKEGARGEGKLFSNYDDVSRAYNSGSI
DIHAKIKLRIDRQVFDTKGNTYNEKGVVNTTVGRALLLNILPEGLSFSLLNKVLVKKEIS
KIINQAFRVLGGKATVVLADKLMYAGFKYSTLSGVSVGVDDMTIPKNKEAKVEEAEKEIK
HITEQYQSSLITENERYNNIINIWSKTSDEVGASMMDAISKDTVMVNGENREIESFNSVY
MMAKSGARGSYNQMRQLAGMRGLMAKPDGTMIETAITANFREGLSVLQYFTSTHGARKGL
ADTALKTANAGYLTRRLVDVAQDLVVIEEDCGTDDGLMFSAIVEDGEVKVPLVERALGRT
LAADVVTEKGVVLLEAGTLLDENLVEILDDNGIDMIKVRSPITCKTRRGLCAKCYGRDLA
RERKVNVGESVGVIAAQSIGEPGTQLTMRTFHTGGAASLGITVSDIKVKTAGKIKFKNIR
TVTNKDGQNIVISRAGEIIVSDTMGRVREQHKIPMGAVVPLASGKGVEIGDVIATWDPHA
QPLITDVAGKVVLEDVIDGITSKHTYDDLTGQQTIEITSISQRTTSKNLKPVVKVVDEKG
NELKSISLAVGAVLNVTDDSVLEVGDVVAKIPLEGSKNKDITGGLPRVAELFEARRPKDA
AILSPCDGMVRLGNRDTKEKQRIEILDKSGHIAEEMLLPKSRHLVVFDGEQVSKGDVLAD
GPTDPHDLLKYKGLEAFADYILIEAQSVYRMQGVVINDKHIETIVRQMLRKATILDEGDS
KFVKDESIELVRILEENDRLAKEGKRLVEYEFTLMGITRSSLSTESFLSAASFQETTRVL
TAASIHSQVDQLRGLKENVLIGRLIPTGTGLAVRKESNKIEKMREELGVEDNMIFTEASS
FNSEDTLFENQIEKEDKDINDDIEESLRNALESLDF
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
gtgaataacggtatcctacatcaaaactacaatagtaaaaagtttgatattattaaaata
tctttagcatctccagaggtcattcgttcatggtctcatggtgaagttaaaaaaccagaa
actataaattatagaacattcaaaccagagagagatggattattctgtgctaaaatcttt
ggtccaataaaagactacgaatgtttgtgtggtaagtataaaagacttaagcatcgtggc
gtagtatgtgagcgttgtggtgttgaggtagagcaggccaaagtacgtagagaaagaatg
ggtcatatagatttagtatgtccagtagtacatatatggtatctaaaatctttgccttct
agaataggtctgtttcttgatatgccattaaagaatgttgagaaggttctatactttgaa
tcttacatagttacagatccaggcatgactccactagagaaaaaacagcttcttactgat
gatgagtatgctgaagctctagagaactatggttatgagtttgaagcatctatgggtgca
gaagctataagagacttattagcagataccgatcttgaaactgaaatagagtctttacaa
gcagaatatgaagagagtaaatctacagctaaaaaagaaaaagctattaagagattaaga
cttcttgaaactttccaagcatctggaaataaacctgagtggatggtaatgactgtatta
ccagttttaccgccagatttaagaccattagttccaattgaaggtggtagatttgcaact
tctgatcttaatgatttgtatcgtagagtaattaatagaaacaatagacttaaaaaacta
ttggatttaagtgctccagatattattgttagaaatgaaaagagaatgttacaggaagct
gtagatgcgttactagataacggtagacgtggtagggctgtaacaggttcaaataagcgt
ccacttaagtctcttgctgatatgataaaaggtaagcaaggacgtttccgtcagaactta
cttggtaaacgtgtagactattctggccgttctgtaattacggttggtccatctctaaga
ttgcatgagtgtggtttacctaaaaagatggcattagagctatttaagccttttgtatac
tctaagttaagattaggtggttatgcaacaactatcaaacaagctaagagaatggttgag
cttgaagaagctgttgtatgggatatcttagaagttgttattaatgagcatcctgtatta
ctaaaccgtgctccaacacttcatagacttggtattcaggcattcgaacctaggctaatc
gaaggtaaagcgatacagctacatcctttggtttgtgcggcatttaacgccgatttcgat
ggtgaccaaatggctgtacacgtaccattaactgtagagtctcaattagaagctagagta
ttaatgatgtctacaaacaacatcttatctccagcatctggtcagccgattatcactcct
actcaagatattgtactaggtttgtactacattactagagagaaagagggcgctcgtggt
gaaggtaaattattctcaaactatgatgacgttagtagagcatataactctggcagtata
gatatccatgctaaaattaagcttagaatagatagacaagtttttgatactaaaggcaat
acttataatgagaagggggttgtaaatactactgttggtagagcactacttcttaatata
ttaccagaaggtttgtcattctcattattaaataaagtacttgttaagaaagaaatttct
aagattattaatcaagcatttagagtgctaggtggtaaggcgactgtagttttagcagat
aaactgatgtatgcaggttttaaatattcgacattatcaggcgtttctgtaggtgttgat
gatatgacaatacctaaaaataaagaagctaaagtagaagaagcagaaaaagaaattaag
catattacggagcagtatcagtcttcattaattacagagaatgaaagatataataatatc
atcaatatttggagcaaaacttcggatgaggttggtgcttcgatgatggatgcgatttca
aaagatactgtaatggtaaatggtgagaatagagaaatcgaatcatttaactctgtatat
atgatggcaaaatcaggtgctaggggttcttataaccagatgagacagcttgcaggtatg
cgtggtctaatggctaagccagatggaacgatgattgaaactgctattaccgcaaacttt
agagaaggcttgtcagtattgcagtactttacatctactcacggtgctcgtaaaggtcta
gcagatacagcattaaagacagctaacgctggttacctaactcgtagacttgtggatgtt
gcccaagatttagttgttatcgaagaagattgtggtactgatgatggtttaatgttttca
gctattgttgaagatggcgaagttaaagttcctttagtagagagagctttaggtagaaca
ttagctgctgatgttgtgactgaaaagggagttgttctattagaagcaggtactctactt
gatgaaaatcttgttgagatacttgacgataatggtattgacatgatcaaggttagatct
ccaattacatgtaaaactcgtagaggcttatgtgctaaatgttatggtcgtgaccttgct
cgtgaaagaaaagtcaatgtcggtgagtctgttggtgtaattgctgctcagtcaattggt
gagccaggtacacagcttacgatgagaacattccatactggtggtgcggcatcattaggt
attacagtatctgatattaaagttaagaccgctggtaagattaagttcaaaaacatcaga
acagttacaaataaagatggtcaaaatatagttatatcaagagctggtgaaattatagtt
tctgatactatgggccgtgttagagagcaacataaaatccctatgggcgcagttgttcct
ttagcaagtggcaagggtgttgagattggcgatgttattgctacttgggatccgcatgct
cagccgttaattacagatgttgctggtaaagttgttttagaagacgttattgatggtatt
acatcaaagcatacatatgatgatttaactggtcagcaaactattgagataacttcaata
tctcaaagaacaacctctaagaacttaaagccagttgttaaagttgttgatgaaaaaggc
aatgagcttaaatcaatttcattagctgtaggtgctgtattgaacgttactgatgattca
gtattagaggttggtgatgttgttgctaagattcctttagaaggatctaagaataaggat
attacaggtggtcttccaagagttgctgaactttttgaggctagacgacctaaagatgct
gcaatattatcaccttgtgatggtatggttagattgggtaatagagatactaaagaaaag
caaaggattgaaatcttggataagagcggtcatattgctgaagagatgctattgcctaaa
tctagacatctagtagtttttgatggtgaacaggtatctaaaggcgacgtgttagccgat
ggtcctactgatccacatgatcttcttaagtataaaggcttagaagcgtttgctgactat
atcttgattgaagctcagtctgtatatcgtatgcaaggtgttgtaattaacgataagcat
attgaaacaatcgttagacagatgttaagaaaagcaacaattcttgatgaaggtgatagt
aagtttgtcaaagatgaaagtattgaattagtaagaatacttgaagaaaatgatagacta
gctaaagaaggtaagagattggttgagtatgagtttactctaatgggtattactagatca
tctttatctacggagtcattcttgtctgcagcatcgttccaagaaacgactagagtatta
actgcggcttcgatacattctcaagttgatcaattaagaggacttaaagaaaacgttctt
attggtagactaatacctacaggtacaggtttggcggttagaaaagagtctaataaaatt
gagaagatgagagaagagctaggtgtagaagataatatgatattcacagaagcatcatca
tttaactctgaagacactctctttgagaatcaaattgaaaaagaagataaagatattaat
gatgatattgaagagtcattaagaaatgctttggaatctttagatttctga
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integrated database retrieval system
