Fervidobacterium nodosum: Fnod_0495
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Entry
Fnod_0495 CDS
T00579
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fno
Fervidobacterium nodosum
Pathway
fno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fnod_0495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fno03019
]
Fnod_0495
03400 DNA repair and recombination proteins [BR:
fno03400
]
Fnod_0495
Enzymes [BR:
fno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Fnod_0495
Messenger RNA biogenesis [BR:
fno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Fnod_0495
DNA repair and recombination proteins [BR:
fno03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Fnod_0495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
FAS_meander
Motif
Other DBs
NCBI-ProteinID:
ABS60359
UniProt:
A7HKC6
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All DBs
Position
533825..535171
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AA seq
448 aa
AA seq
DB search
MDKKEALEHLRNKFGFNNFKENQWEIIQRILNGEKILLIARTGFGKSLCYQFPATVFDGI
TLVFSPLIALMRDQVKFLRKKGIPAASINSNHSDDNEENRKINKKILEDAVNGKYKILYI
APERIDNETWKKYLPNLKISFVVVDEAHCISVWGHDFRPDYRKIREIIRAVPKSIPVLAV
TATADDFIAEDIKEQMQSYIGEDIEIVRNDLFRENLRIRVIEVNGEEEKLAFLLRYLKEN
NNGSGIVYTASRGRAEKYSRWLRFNNINAIYYHSEIKSKDRKTIEKEFFENKYKCVVATN
ALGMGIDKKDIRFIIHTEFPGSLIHYYQEIGRAGRDNKPSDIILLYDEKDIEIQEYFIDQ
SKPERYKYELVLISLKRKRATFDELVNETKLRKREVNNILVDLQDQRAIFKNNLDGKTYY
EYNPNFKEINYAKIEEIKRYKLKKIVRF
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggataagaaagaagccttggaacatctaagaaacaaatttggatttaataattttaag
gaaaatcaatgggagataattcaaaggatactaaatggtgaaaagatattactaatagca
agaacaggcttcggaaaatctttatgttatcaattccctgcaacagtatttgatggtatc
acattagtgttctctccactaatagcgctcatgagagatcaagtaaagttcttaaggaaa
aaaggtatacccgcagcaagtataaacagcaatcattcagatgataatgaagaaaatagg
aaaataaataagaaaatattagaagacgctgtcaatggaaaatacaaaatactgtacata
gccccagaaagaattgacaatgaaacatggaaaaaatacttacccaacttgaaaatatca
ttcgtcgtagttgacgaagcacattgcatatctgtatggggtcatgacttcagaccagat
tatagaaaaattagagaaataataagagctgtgccaaaaagcatacctgtattagctgta
acagcaacagccgacgatttcatcgcagaagatattaaagaacagatgcaatcgtatatt
ggagaagatatagaaatagtgagaaatgatctatttagagaaaatttaagaattagagtt
atagaagtaaatggtgaagaagaaaaactagcttttttactgcgataccttaaagaaaat
aacaacggtagtggaattgtttacaccgcttcaagaggaagagcggaaaaatactctaga
tggttaagattcaacaacattaacgctatatattaccattcagaaattaaaagtaaagat
agaaaaaccatagagaaagaatttttcgaaaacaaatataaatgtgtagtcgcgacaaac
gctttaggaatgggaatagacaaaaaagacataagattcatcattcatacagaatttcct
ggatccttgatacactattaccaagaaataggaagggcaggtagagataataaaccatct
gatataatattgttgtacgatgaaaaagatatagaaatacaagaatactttattgatcaa
agcaaaccagaaagatataaatatgaattagttttaatttctttgaaaagaaagagagcc
actttcgatgaattagtgaatgaaaccaaattgcgcaaaagagaagttaataacatatta
gtagatttgcaagaccaaagagctatatttaaaaacaatttagatggaaaaacatactac
gaatacaatccaaactttaaagaaatcaactatgccaaaatcgaggagataaagagatat
aaattaaaaaaaattgtacgattttaa
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