Fervidobacterium nodosum: Fnod_0636
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Entry
Fnod_0636 CDS
T00579
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fno
Fervidobacterium nodosum
Pathway
fno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fnod_0636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fno03019
]
Fnod_0636
03009 Ribosome biogenesis [BR:
fno03009
]
Fnod_0636
Enzymes [BR:
fno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Fnod_0636
Messenger RNA biogenesis [BR:
fno03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Fnod_0636
Ribosome biogenesis [BR:
fno03009
]
Prokaryotic type
rRNA helicases
Fnod_0636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Helicase_RecD
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABS60491
UniProt:
A7HKQ8
LinkDB
All DBs
Position
complement(699047..700762)
Genome browser
AA seq
571 aa
AA seq
DB search
MKYMVNTGSVLDETKNYERFEDFGLSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLI
AQAQTGTGKTAAFGIPLLERIDFKANKFVKAIIVTPTRELALQIFEELKSLKGTKRVKIT
TLYGGQSLEKQFKDLEKGVDIVVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFL
DDVLEIIKRTGENKRTFLFSATMPKEIVDIARKFMKEYIHVSTVKDELTTENAEQLYFEV
DEKDKLPLLCRIIDMNPDFYGIVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERV
LDKFRKKQLRILVTTDVAARGIDIDGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAIT
FVTRDDYFHFARVKRFAKAKIIKDSIPQVEDILNRQLEKLLDTLKNAPKVSNELYKRAAQ
QIIEEMGPTEAVEMLLHTLIKDKIDVSRYGDVKPKNFSKGREQNFGDSNKNVDSGSVRLF
VNMGSSKGLDKKKLVEFISERTGVEPSNINNVKVFENFSFIDVSEFDAEVILKTLNPKRG
KNSRSKPLVERAREKRENRENRESKERKSRT
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
gtgaagtacatggtaaacacgggaagtgtattagacgaaacaaaaaactacgagagattt
gaagattttggcttgagtgaagaaattctcttggctattcaaaagaaaggctatgaaaaa
cccacggaaatacaaaaaattgttttaccttacgctttatcaactgataaggatttgata
gctcaagcacaaacaggaacaggtaaaacggcagcatttggaatacctttgcttgaaagg
atagatttcaaggcaaacaaatttgtaaaggctataatagttacacctacgcgcgaatta
gcgttgcaaatcttcgaagaactgaaaagtttgaaaggtaccaaacgagttaaaataaca
acactttacggtggtcaatcacttgaaaagcaattcaaagaccttgaaaaaggtgttgat
atagtagttggcacaccgggtagaattatagaccacctaaatcgtgacactcttgacctt
tcacatgtggaatatcttgtccttgatgaagccgatagaatgcttgacatgggattttta
gatgatgtacttgaaataattaagagaactggcgaaaataagagaacatttcttttttct
gcgacgatgccaaaagaaatagttgatatagcaagaaaattcatgaaagaatatatacac
gtatcaacggttaaagatgaacttacgacagaaaatgcggagcaactttactttgaagtc
gatgaaaaggataaattgccattactctgcagaattatcgacatgaatccagatttttac
ggtatcgttttttgccagacaaaattagaagttgatgaaatatccaaaaaactcttggac
cttggttacaatgcagatggtctccatggtgattactctcaataccaaagagaaagagta
cttgataaatttagaaaaaagcaattgagaatattagtcacgacagatgtggcagctcgt
ggtattgatattgatgggctgacgcatgttataaattattctgttccaagagatcctgag
tattacgtacacagaattggaagaactggaagagctggaaaaaaaggttttgctatcaca
ttcgtcacaagagatgattacttccactttgcgagagttaagagatttgctaaggcaaag
ataatcaaagattcaatcccgcaggttgaagacatacttaacaggcaacttgaaaaactt
ttagatactttaaaaaatgcaccaaaagtttcaaacgaactttacaaaagagcagctcaa
caaattatcgaggaaatgggaccaactgaagctgttgaaatgcttctccatactttgata
aaagataagatagatgtatcaaggtatggtgatgtaaaaccgaagaacttttctaaagga
agagaacaaaattttggggattcaaacaaaaatgttgattctggaagtgtaagattattc
gtaaatatgggcagttcaaaaggactagataagaaaaagcttgtagagttcatatctgaa
agaacgggtgttgagccatctaatatcaacaatgtaaaagtctttgaaaatttctctttc
atagatgtaagtgaatttgacgcagaagttatattgaagacattaaatccaaaaaggggt
aaaaattcacgctctaaacctctcgttgaaagagcgagggaaaaaagagaaaatagggaa
aatagagaaagcaaagaaagaaaatcaagaacttaa
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