Fervidobacterium nodosum: Fnod_1110
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Entry
Fnod_1110 CDS
T00579
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
fno
Fervidobacterium nodosum
Pathway
fno03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fno00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Fnod_1110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fno03021
]
Fnod_1110
03400 DNA repair and recombination proteins [BR:
fno03400
]
Fnod_1110
Enzymes [BR:
fno01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Fnod_1110
Transcription machinery [BR:
fno03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Fnod_1110
DNA repair and recombination proteins [BR:
fno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Fnod_1110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
DUF6327
DUF2935
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
ABS60957
UniProt:
A7HM24
LinkDB
All DBs
Position
complement(1209118..1210104)
Genome browser
AA seq
328 aa
AA seq
DB search
MIQITGRKFKLEEQVEHEDHYYARYSLSPLEKGYAVTVGNTLRRVLLSSIPSFAITDVRF
VKPEKYHEFDTIEGAKEDIMDILLNLKKVQLRVDTYVESPVKLTINKKGPGVLTAGDIEC
PAGVVVVNPGHYLATLNEDADLEIELYATFGKGFVPAADRNERPEIGWIVLDGVYSPVIK
VNWLVENVRVDKRTDYEKLILEIWTKKSIKPSEALKHSLKIILDHFMFIEQSLSDVEELP
IPIIQETAVVTEEIGSPEDVMSKKVEELELSARSLNCLKRDKIETIGDLLSRTEEELMKI
KNFGLKSLEEVREKLRDKFGLSLRKGDK
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgattcaaattacaggaaggaaattcaaattagaagagcaggtagaacacgaggaccat
tattatgcaaggtattccctctcaccgcttgaaaaaggttacgccgtaacagttgggaat
acacttagaagagttctcctctcttctattccaagttttgcaataactgatgtaagattc
gtaaaaccagaaaaataccatgagtttgatacaatcgaaggcgcaaaagaagacataatg
gatatactcttgaatcttaagaaagtgcaattacgcgttgatacctacgttgaatcgcct
gtgaaattaacgataaataaaaaaggacctggagtacttacggcaggggatattgaatgc
ccagcgggagtagttgtggtcaatccaggtcattaccttgcaacgctgaacgaagacgct
gatttagaaatagaactctatgcaacatttggaaaaggctttgtcccggcagcagataga
aatgaaagaccagaaataggttggattgttttagatggagtctacagcccagttataaaa
gtcaattggcttgttgaaaatgttcgtgttgataaaagaacggactatgaaaaactcatt
cttgaaatttggacaaagaagagcataaaaccatctgaagctttgaagcattcactaaaa
ataattcttgaccactttatgtttatcgaacaaagtcttagtgatgttgaggaattacca
ataccaataatacaagaaactgcagtagtaacagaagaaataggttcgccagaagatgta
atgagcaaaaaagttgaagaactagaactatctgcaagatcacttaattgtttgaagaga
gacaagatagagacaataggtgatctgttatcaagaacagaagaagagttgatgaaaata
aagaattttggcctcaaatctctcgaggaagtaagagaaaaactccgtgacaaatttggt
ctgtcactaagaaagggggacaaatga
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