Fusobacterium vincentii 3_1_27: HMPREF0405_00414
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Entry
HMPREF0405_00414 CDS
T03625
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fnt
Fusobacterium vincentii 3_1_27
Pathway
fnt03410
Base excision repair
fnt03430
Mismatch repair
fnt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fnt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HMPREF0405_00414
03430 Mismatch repair
HMPREF0405_00414
03440 Homologous recombination
HMPREF0405_00414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fnt03400
]
HMPREF0405_00414
DNA repair and recombination proteins [BR:
fnt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HMPREF0405_00414
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HMPREF0405_00414
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF0405_00414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF2278
PBP2_Ca3427_like
Motif
Other DBs
NCBI-ProteinID:
EFG34147
LinkDB
All DBs
Position
1:628315..630849
Genome browser
AA seq
844 aa
AA seq
DB search
MKKNTKWILENKTNYEKIFEDKREKKLDFIIEDLIENRNLSLDTNFDFNPFDLKDMEVAT
QRIFEAIKNNQKIYIYGDYDVDGITSVSLLYLALSELGANVDYYIPLRDEGYGLNKEAIQ
ILKNENADLIISVDCGINSIEEINFANELNLDFIITDHHEITGDIPKALAVINPKREENI
YSFKYLAGVGTAFMLVYALYTQMNKLNDLEKYLDIVAIGTVADIVPLVSDNRKFVKGGLK
LLNNTKWIGIKQLLRKIFPDNWDTREYFAYDVGYIIAPIFNAAGRLEDAKQAVSLFIEED
GFKCLSIIDKLLENNVERKDIQKKILEMSIAEIEKKQLYNKNLILVANKSFHHGVIGIVA
SKILDKYYKPTIIMEIKENEGVATASCRSIDGVNIVECLNSVSDILVKYGGHSGAAGFTI
KIENIEEFYQRVDKFIEENFDKDLFIKKLKIEKILAPYKVNYEFLKELEILEPYGAKNHT
PIFAFRNCEYENLRFTRNSTEHLMLDIKKDGYYFKNCIFFGGGDYYDIISSSKEIDIAFK
LKLETFKDRYMCKLQLEDVKNSNDNTDFQDDYLELNGKDISFPMETVVYPKRSDIEDPLY
LIFNDYGVAITKDRTIIENIDSNLAKILTILKNKFNYEFSVKIKKKYLKSENINLHLEID
IIKDNGLKSFPLKDALIFKEIKKLLIGNFEYNSIQKKVLASIFKDKKKTLAIIDRKRGTT
TIIDTIKFYCKYRNLKLSINSEKEKADFYIFENFTEIEKINFLLTNNILIISNKNVEVNN
FNKIIDDYSIPKNIEYIDYSDISILKRNNNLYYPFLTDEEKNNMLELIRENKVVFSTREI
IVHF
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaatactaaatggattttagaaaataaaactaattatgaaaaaatttttgaa
gataaaagagaaaaaaaattagattttattattgaagatttaattgaaaatagaaatcta
tctcttgatacaaattttgattttaatccttttgatttaaaagatatggaggtggctact
caaaggatttttgaagcaataaaaaataatcaaaaaatttatatctatggagattatgat
gttgatgggataacatctgtttctcttttatatttggcactttctgagttaggtgcaaat
gttgactattacattcctttaagagatgaaggttatggtttaaataaagaagctatacaa
attttaaaaaatgaaaatgcagatttgattataagtgtggattgtgggattaattcaata
gaagaaattaattttgccaatgaattaaatttagattttataataactgatcaccatgaa
ataactggtgatattcctaaggcacttgctgttataaatcctaaaagagaggagaatatt
tattcttttaaatatcttgcaggagtggggactgcttttatgttagtctatgcactatat
acccaaatgaataaattaaatgatttagaaaaatatttggatattgttgcaataggtact
gttgcagatatagttcccttagtttcagataatagaaaatttgtaaaaggaggtttaaaa
cttttaaataatactaaatggataggtattaaacaattacttagaaaaatatttcctgat
aactgggatacaagagaatattttgcttatgatgtgggttatattattgcaccaattttt
aatgctgctgggcgtttagaagatgcaaaacaggcagtgagcttatttatagaagaagat
ggttttaaatgtctttctattatagataaacttttagaaaataatgttgaaagaaaagat
attcaaaaaaagattttagaaatgtctattgctgaaattgaaaaaaaacaactatataac
aaaaatttaattttggttgcaaataaatcctttcatcatggtgttattggaatagttgct
tcaaagattttggataaatattataagccaactataattatggaaattaaagaaaatgag
ggtgttgctactgcttcttgtagaagtatagatggtgtaaatatagttgaatgtttaaat
tctgtttctgatattttagttaagtatggaggacattcaggagcagcaggttttacaata
aaaatagaaaatatagaagaattttaccaaagagtagataaatttattgaagaaaatttt
gataaagatttattcataaagaaattaaaaatagaaaaaatattagcaccatataaagta
aattatgaattcttaaaagaattagagattttagaaccttatggagctaaaaatcatact
cctatttttgcttttaggaattgtgagtatgaaaatttaagatttacaagaaatagcaca
gaacatttaatgttagatataaaaaaagatggatattattttaaaaactgtatatttttt
ggtggtggagattattatgatattatttcaagttcaaaagaaattgatatagcttttaaa
ttaaaattagaaacttttaaagatagatatatgtgtaaattacaacttgaagatgttaaa
aattccaatgataatactgattttcaagatgattatttggaattaaatggaaaagatatt
tcttttccaatggaaactgttgtatatcctaaaagatcagatatagaagatcctttatat
ttaattttcaatgattatggtgtagctataacaaaagatagaacaattatagaaaatata
gatagtaatttagcaaaaattttaactattttaaaaaataaatttaattatgaattttct
gtaaaaattaaaaaaaagtatttaaaaagtgaaaatataaatttacatttagaaattgat
ataataaaagataatggtttaaaatcctttcctttaaaagatgctttaatatttaaggag
attaaaaaacttttaattggaaattttgaatataattctatacaaaaaaaggtacttgct
tcaatttttaaagataagaaaaaaactttggctattatagatagaaaaagaggaacaacg
acaataattgacactattaaattttattgtaaatataggaatttaaaactttctataaat
agtgagaaagaaaaagcagatttttatatttttgaaaattttactgaaatagaaaaaatt
aattttctattaacaaataatattcttataatttcaaataaaaatgttgaagttaataac
tttaacaaaattatagatgattattctatacctaagaatattgaatatattgattatagt
gatataagtattttaaaaagaaataataatttatattatccatttttaactgatgaagaa
aaaaataatatgttagagttgataagggaaaataaagttgtattttcaacaagagaaata
attgtacatttttag
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