Fusobacterium vincentii 3_1_27: HMPREF0405_01231
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Entry
HMPREF0405_01231 CDS
T03625
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
fnt
Fusobacterium vincentii 3_1_27
Pathway
fnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0405_01231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fnt03021
]
HMPREF0405_01231
03019 Messenger RNA biogenesis [BR:
fnt03019
]
HMPREF0405_01231
Transcription machinery [BR:
fnt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HMPREF0405_01231
Messenger RNA biogenesis [BR:
fnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HMPREF0405_01231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
AAA_24
AAA_19
USP_UIM_N
OB_RNB
Spore_III_AA
AAA
AAA_23
Motif
Other DBs
NCBI-ProteinID:
EFG34950
LinkDB
All DBs
Position
1:complement(1519637..1520878)
Genome browser
AA seq
413 aa
AA seq
DB search
MDILNKLLLKDLQEIAKVMEIETTTGQKKDDLKRLISHSLEENNTVLAYGTLDTAPEGFG
FLKETTLGKNIYMSASQIKRFKLRRGDQVLGEVRNPIGEEKNFAIRRVLKANDDDLAALE
SRVPFEDLIPTYPTEQFKLGIEQDNISGRILDLISPIGKGQRALIIAPPKAGKTTFISSI
ANALIKGQQDSEVWILLIDERPEEVTDIKENVEGATVFASTFDDDPKNHIKVTEEIIEKA
KMKVEDGENVVILLDSLTRLARAYNIVMPSSGKLLSGGIDPTALYHPKNFFGAARNIKDG
GSLTIIATILVDTGSKMDEVIYEEFKSTGNCDIYLDRQLAEFRIFPAIDITKSGTRKEEL
LLNKNQIDDIWNLRRLLNDYDNKISATSALIKAIKTTRNNDELLAQLPKVLYK
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atggatattttaaataaacttcttttaaaagatttacaagagatagcaaaggttatggag
atagaaacaacaacaggtcaaaaaaaagatgatttaaaaagattgatatcacattctctt
gaagaaaataacacagttcttgcttatgggacattagatactgctcctgagggttttggt
ttcttaaaagaaactacattaggtaaaaatatttatatgtctgcttcacaaataaaaaga
tttaaacttagaagaggtgatcaagttttaggtgaagttagaaatcccataggtgaagaa
aagaattttgctataaggagagttctaaaagctaatgatgatgatttagctgcattggaa
agtagagttccatttgaagatttaattcctacttatccaacagaacaatttaaacttggt
atagaacaagataatatttctggaagaatattagatttaatatctccaataggaaaagga
caaagagctttaataattgcaccaccaaaagctggaaaaacaacttttataagttctatt
gccaatgccttaattaaaggtcaacaagactcagaagtttggatattattaatagatgaa
agaccagaagaggttacagatattaaagaaaatgttgaaggagcaacagtttttgcttca
acatttgatgatgatcctaaaaatcatataaaagtaacagaagaaataattgaaaaagct
aaaatgaaagttgaagatggagaaaatgtagtaattttacttgattctttaactaggctt
gcaagagcatataatattgtaatgccatcaagtggtaagttgctatcaggggggatagat
ccaacagcattataccatccaaaaaacttttttggagcagcaagaaatataaaagatggt
ggaagtttaacaattattgctacaattcttgttgatacaggaagtaaaatggatgaagtt
atctatgaagaatttaaatcaacaggaaattgtgatatttatttggatagacagttagct
gaatttaggatttttcctgcaatagatataacaaaatcaggaacaagaaaagaagaactg
cttcttaataaaaatcaaatagatgatatttggaatttaagaagattactaaatgattat
gacaataaaattagtgctacctcagcattaataaaggcaataaaaacaactagaaacaat
gatgaattattagcacagctccctaaggttctgtacaaataa
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