Fusobacterium vincentii 3_1_27: HMPREF0405_01848
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Entry
HMPREF0405_01848 CDS
T03625
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fnt
Fusobacterium vincentii 3_1_27
Pathway
fnt03410
Base excision repair
fnt03430
Mismatch repair
fnt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fnt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HMPREF0405_01848
03430 Mismatch repair
HMPREF0405_01848
03440 Homologous recombination
HMPREF0405_01848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fnt03400
]
HMPREF0405_01848
DNA repair and recombination proteins [BR:
fnt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HMPREF0405_01848
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HMPREF0405_01848
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF0405_01848
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Hom_end
Motif
Other DBs
NCBI-ProteinID:
EFG35490
LinkDB
All DBs
Position
1:89616..91289
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AA seq
557 aa
AA seq
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MVYMVKEKSTDELIKELLEKRNHESKNQIEKFINPDYSDFRNPFDFENMEAIVNKIIFAR
KNKEKIFIYGDYDVDGISGTAFLTKFFNEIGIIVDCYIPSRKETDYGVSKKSIDYFHKRH
GKLVITVDTGYNTIEDVRYAKSLGIEIIVTDHHKTVKEKFDDEILYLNPKLSKTYKFQYL
SGAGVAFKLAQGICMSLGLDMEIIYKYLDIVMIGTIADVVPMMDENRLIIKKGLKIIKNT
EVKGLSYLLNYLRLNKKILTTTDVSYYISPLINSLGRVGISRMGADFFLKDDDFDLYNII
EEMKEQNKQRRALEKHIFDDAMRKIKNLKIPLDKLSVIFLSSPKWHPGVIGVVSSRLAIK
FNIPVILVAIEGDYGKASCRSVGDISIFNLLSDVKNLLERYGGHDLAAGFVIHKENISKV
KEYLINTIPKMKLEHNKNKKDYEKNFDFELPIEDLGDKTFEFMEKMGPFGSNNPHPLFFD
RDLKLGEVKRFGVDSRHFNGIIYKDNVSFNAVGFELAEKIASDYMNKTYNIVYYPEKIIL
NDEEVTQIILKSIKENK
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtggtgtatatggttaaagaaaaaagtacagatgagttaataaaggaattgcttgaaaaa
agaaaccatgaaagtaaaaatcaaatagaaaaatttataaacccagattattcagatttt
agaaatccttttgattttgaaaatatggaggctattgttaataaaataatttttgctaga
aaaaataaagaaaaaatatttatctatggagattatgatgttgatggaatcagtggaaca
gcatttttaacaaaattttttaatgaaattggaataattgttgattgttatataccaagt
agaaaagaaacagattatggagtttcaaaaaaaagtatagactattttcataaaagacat
ggaaagttagttataactgttgatacaggttataacacaatagaagatgtacgatatgct
aaaagtttaggtatagaaattatagttacagaccatcataaaactgtaaaagaaaagttt
gatgatgaaatattatatctaaatcctaaacttagtaaaacttataaatttcaatatctt
tcaggtgctggtgtggcttttaaattggcacaaggaatatgtatgagtttaggtttagat
atggagataatctataaatacttggatatagtgatgatagggacaatagcagatgttgta
cctatgatggatgaaaaccgtttgataataaaaaaaggtttaaaaattataaaaaatact
gaggtaaagggactatcttatttacttaattatctaagacttaataagaaaatcttaaca
acaacagatgtaagttactatatttcccccttgataaattctttggggagagtaggaata
tcaagaatgggagcagatttttttctcaaagatgatgactttgatttgtataatataatt
gaagagatgaaagagcaaaacaaacaaagaagagccttagaaaaacatatctttgatgat
gctatgagaaaaattaaaaatttaaaaattccattagataaactctcagttatatttttg
tcttcacctaagtggcacccaggagtaataggggttgtttcatcaaggctagctataaaa
tttaatattcccgttatattagtggcaatagagggagattatggaaaagcttcttgtaga
agtgttggagatataagtatatttaaccttttatcagatgtaaaaaatcttttagaaaga
tatggaggacatgatttggcagcaggttttgttatccataaagaaaatataagtaaagtt
aaggaatatttgattaatactattcctaaaatgaagttagagcataataaaaataaaaaa
gattatgagaagaattttgactttgaacttccaatagaagatttgggagataagacattt
gagtttatggaaaaaatggggccctttggttcaaataatccacaccctttattctttgat
agagatttaaaattaggtgaagtaaaaagatttggagtagattctagacattttaatggg
ataatatataaagataatgtaagttttaatgctgttggctttgagttagcagaaaaaata
gcttctgactatatgaataaaacatataatatagtatactatccagagaaaataatttta
aatgatgaagaagttacacaaattattttaaaaagtataaaagaaaataaataa
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