Fusobacterium vincentii 3_1_27: HMPREF0405_01970
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Entry
HMPREF0405_01970 CDS
T03625
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fnt
Fusobacterium vincentii 3_1_27
Pathway
fnt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fnt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF0405_01970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fnt03021
]
HMPREF0405_01970
03400 DNA repair and recombination proteins [BR:
fnt03400
]
HMPREF0405_01970
Enzymes [BR:
fnt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF0405_01970
Transcription machinery [BR:
fnt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF0405_01970
DNA repair and recombination proteins [BR:
fnt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF0405_01970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
PTS_EIIA_1
Motif
Other DBs
NCBI-ProteinID:
EFG35394
LinkDB
All DBs
Position
1:complement(1713992..1717951)
Genome browser
AA seq
1319 aa
AA seq
DB search
MGIRSFEKIRIKLASPEKILEWSHGEVTKPETINYRTLNPERDGLFCEVIFGPTKDWECS
CGKYKRMRYKGLVCEKCGVEVTRAKVRRERMGHITLASPVSHIWYSKGSPNKMSLIIGIS
SKELESVLYFARYIVTSSQESTVEVGKILTEKEYKLLKQLYGNKFEAYMGADGILKLLTA
IDLEKLRDELENELVDANSAQKRKKLVKRLKIVRDFIASGNRPEWMILTNVPVIPAELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLEIKAPEIVVKNEKRMLQEAVDALIDNGR
RGKPVVAQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPSLKMNQCGIPKK
MALELYKPFIMRELVRRELANNIKMAKKLVEESDDKVWAVIEDVIADHPVLLNRAPTLHR
LSIQAFQPVLIEGKAIRLHPLVCSAFNADFDGDQMAVHLTLSPESMMEAKLLMFAPNNII
SPSSGEPIAVPSQDMVMGCFYMTKERAGEKGEGKIFSNIEQVITAYQNDKVGTHALIKVR
MNGELVETTPGRVLFNEILPEIDRNYHKTYGKGEIKALIKSLYEAHGFTETAELINRVKN
FGYHYGTFAGVSVGIEDLEVPPKKKDLLNKADKEVAQIEKDYKSGKIINEERYRKTIEVW
SRTTEAVTKAMMDNLDEFNPVYMMATSGARGNVSQMRQLAGMRGNMADTQGRTIEVPIKA
NFREGLTVLEFFMSSHGARKGLADTALRTADSGYLTRRLVDISHEVIVNEEDCHTHEGIE
VEALVGANGKIIEKLSERINGRVLAEDLVHKGKKIAKRNTMIHKDLLDKIEELGIKKVKI
RSPLTCALEKGVCQKCYGMDLSNYNEILLGEAVGVVAAQSIGEPGTQLTMRTFHTGGVAG
AATVVNSKKAENDGEVSFRDIKTIEINGEDVVVSQGGKIIIADNEHEVDSGSVIRVKEGQ
KVKEGDVLVTFDPYHIPIISSHDGKVQYRHFTPKNIRDEKYDVHEYLVVRSVDSVDSEPR
VHILDKKNEKLATYNIPYGAYMMVRDGAKVKKGDIIAKIIKLGEGTKDITGGLPRVQELF
EARNPKGKATLSEIDGRIEILPTKKKQMRVVNVKSLENPEEFKEYLIPMGERLVVTDGLK
IKAGDKITEGAISPYDVLSIKGLVAAEQFILESVQQVYRDQGVTVNDKHIEIIVKQMFRK
VRIVDSGASLFLEDEVIEKRVVDLENKKLEEEGKALIKYEPVIQGITKAAVNTGSFISAA
SFQETTKVLSNAAIEGKVDYLEGLKENVILGKKIPAGTGFNKYKAIEVRYNTDDKSEEE
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgggaataagaagttttgaaaaaattagaataaaattagcatctcctgaaaaaatattg
gaatggtctcatggggaagtaacaaaacctgaaactataaattatagaacacttaatcct
gaaagagatggattattctgtgaagtaatatttggaccaacaaaagactgggaatgttct
tgtggaaaatacaagagaatgagatataaaggcttagtttgtgaaaaatgtggagttgaa
gtgacaagagctaaggttagaagggaaagaatgggacatataactttggcttctcctgtt
tctcatatttggtattcaaaaggaagtccaaataagatgtctttgattataggtatctca
tcaaaagaattggaatcagttctatattttgcaagatatatagtaacttctagccaagaa
tcaactgttgaagttggaaagatattaacagaaaaagaatacaagttgttaaaacaatta
tatggaaataagtttgaagcttatatgggggcagatggaattttaaaactccttacagct
attgacctagaaaaattaagagatgaattagaaaatgaattagtagatgctaattcagct
caaaaaagaaagaaacttgtaaaaagattaaaaatagttagggattttatagcttctgga
aatagacctgaatggatgatacttacaaatgttcctgtaattccagctgaacttagacct
atggttcaacttgatgggggaagatttgcaacatctgatttaaatgatttatatagaaga
gttataaatagaaataacagacttaaaaaactactagaaataaaagcacctgaaattgtt
gtaaaaaatgaaaaaagaatgctacaagaagcagtagatgcccttattgataatggtaga
agaggtaaaccagtagttgctcaaaacaatagagaattaaaatctctatctgatatgtta
aaaggaaaacaaggaagatttagacaaaatctattaggaaaaagagttgactattcagca
agatctgttatagttgttggaccatctttaaagatgaatcaatgtggtattcctaagaaa
atggctcttgaactatataaaccatttataatgagagaattggtaagaagagaattagct
aataatataaaaatggctaaaaaattagttgaagaatctgatgataaagtttgggcagta
atagaagatgttattgcagatcaccctgttttattaaacagagcccctacattacataga
ttatcaatacaagcattccaacctgtattgatagaaggtaaagctataagattacatcct
cttgtttgttcagctttcaatgctgactttgatggagaccaaatggcagtacacttaact
ttatctcctgaatctatgatggaagctaaactattaatgtttgctcctaacaatataatt
tctccttcaagtggagaacctattgcagttccttcacaagatatggtaatgggttgtttc
tatatgacaaaggaaagagcaggagaaaaaggagaaggtaagatattctctaatatagaa
caagtaattacagcttatcaaaatgataaagtgggaactcatgctctaataaaagttaga
atgaatggagaattagttgaaacaactcctggaagagtattatttaatgaaattttacca
gaaatagatagaaattatcataaaacttatggtaaaggagaaataaaagctttaattaaa
tctttatatgaagctcatgggttcactgaaacagccgaacttattaatagagttaaaaac
tttggataccactatggtacatttgcaggagtttcagtaggaatagaagatttagaagtt
ccacctaagaagaaagatttattgaataaagcagataaagaagttgctcaaatagaaaaa
gattataaatctggaaaaataataaatgaagaaagatatagaaagacaatagaagtttgg
tcaagaacaacagaagcagttactaaggcaatgatggataatttggatgaattcaaccca
gtttatatgatggcaacatcaggagccagaggtaatgtaagccaaatgagacaattagct
ggaatgagagggaacatggcagatacacaaggtagaaccatagaagttcctataaaagct
aatttcagagaaggactaacagtattggaattctttatgtcttcacatggagcaagaaaa
ggacttgccgatacagccctaagaactgccgattcaggatacttaacaagaagacttgtt
gatatttctcatgaagttatagttaatgaagaagattgtcatacacatgaaggaatagaa
gttgaagcacttgttggggcaaatggtaaaataattgaaaaattaagtgaaagaattaat
ggtagagttttagctgaagaccttgtccataaaggaaagaaaatagctaaaagaaatact
atgattcataaagacttattagataaaatagaagaattaggaattaaaaaagtaaaaata
agatctcctttaacttgtgcattagaaaaaggagtttgccaaaaatgttatggtatggat
ttgtcaaactataatgaaattttactaggagaagctgttggagtagttgctgctcaatca
ataggagaacctggtactcaacttacaatgagaactttccatacaggaggagttgcagga
gcagctactgttgttaattctaagaaagctgaaaatgatggagaagtttcatttagagat
attaaaactattgaaatcaatggagaggatgtagttgttagccaaggtggaaagattatt
atagcagataatgaacatgaagtggattctggttcagtaataagagtaaaagaaggacaa
aaggtaaaagaaggagatgtacttgttacatttgatccttaccatatccctataatctca
tctcacgatgggaaagtacaatatagacactttactcctaaaaatattagagatgaaaaa
tatgatgttcatgaatatctagttgtaaggtctgttgatagtgttgactcagaaccaaga
gtacatatacttgataagaaaaatgaaaaattagcaacatataatattccttatggagca
tatatgatggtaagagatggagctaaggttaaaaaaggtgacatcatagctaagattatc
aagttaggggaaggtactaaggatatcactggtggtcttccaagagtacaagaattattt
gaagcaagaaatccaaaaggaaaagctacactttctgaaatagatggaagaatagaaata
ttaccaactaagaaaaaacaaatgcgtgtggttaatgttaaatcattagaaaatccagaa
gaatttaaagaatatttaattcctatgggtgagcgtttagttgttactgatggattaaaa
ataaaagcaggagataagataacagaaggggctatttctccttatgatgtactaagtatc
aaaggacttgtagcagctgaacaatttatacttgaatctgtacaacaagtttatagagat
caaggtgttacagttaatgataaacatatagaaattattgttaaacaaatgtttagaaaa
gttagaatagttgactctggagcatctttattccttgaagacgaagttatagaaaagagg
gttgtagaccttgaaaataagaaattggaagaagaaggaaaagcacttatcaaatatgaa
ccagttatacaaggtatcacaaaagctgctgtaaacactggaagctttatatctgctgct
tcattccaagaaacaacaaaagttttatcaaatgctgctattgaaggaaaggttgactac
ctagaaggattgaaggaaaatgtaattttaggtaagaagattccagcaggaacaggattt
aataagtataaagcaatagaagttagatataatactgatgacaaatcagaagaggaataa
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integrated database retrieval system
