Fusobacterium vincentii 3_1_27: HMPREF0405_01971
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Entry
HMPREF0405_01971 CDS
T03625
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fnt
Fusobacterium vincentii 3_1_27
Pathway
fnt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fnt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF0405_01971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fnt03021
]
HMPREF0405_01971
03400 DNA repair and recombination proteins [BR:
fnt03400
]
HMPREF0405_01971
Enzymes [BR:
fnt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF0405_01971
Transcription machinery [BR:
fnt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF0405_01971
DNA repair and recombination proteins [BR:
fnt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF0405_01971
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
EFG35395
LinkDB
All DBs
Position
1:complement(1717987..1721541)
Genome browser
AA seq
1184 aa
AA seq
DB search
MQKLIERLDFGKIKPRGQMPHFLEFQLNSYEDFLQTNVSPNKREEKGFELAFKEIFPIES
SNGDVRLEYIGYELHEAEAPLNDELECKKRGKTYSNSLKVRLRLINKKMGNEIQESLVYF
GEVPKMTDRATFIINGAERVVVSQLHRSPGVSFSKEVNTQTGKDLFSGKIIPYKGTWLEF
ETDKNDFLSVKIDRKKKVLATVFLKAVDFFKDNNEIRDYFLETKELNLKTLYKKYSKEPE
ELLNVLKQELDGSIVKDDILDEETGEFIAETEAFINEEVINNLIENKVDKISYWYVGPES
KLVANTLMNDTTLTEDEAVVEVFKKLRPGDQVTVDSARSLIRQMFFNPQRYDLEPVGRYK
MNKRLKLDVPEDQISLTKEDVLGTIKYVIELNNGDQNVHTDDIDNLSNRRIRGVGELLLM
QIKTGLAKMNKMVREKMTTQDIETVTPQSLLNTRPLNALIQDFFGSGQLSQFMDQSNPLA
ELTHKRRISALGPGGLSRERAGFEVRDVHDSHYGRICPIETPEGPNIGLIGSLATYAKIN
KYGFIETPYVKVENGVALVDDVHYLAADEEDGLFIAQADTKLDKNNKLQGLVVCRYGHEI
VEIEPERVNYMDVSPKQVVSVSAGLIPFLEHDDANRALMGSNMQRQAVPLLKSEAPFIGT
GLERKVAVDSGAVVTTKVSGKVTYVDGKKIIIEDKDKKEHIYRLLNYERSNQSMCLHQTP
LVDLGDKVKAGDIIADGPATKLGDLSLGRNILMGFMPWEGYNYEDAILISDRLRKDDVFT
SIHIEEYEIDARTTKLGDEEITREIPNVSESALRNLDENGVIMVGSEVGPGDILVGKTAP
KGETEPPAEEKLLRAIFGEKARDVRDTSLTMPHGSKGVVVDILELSRENGDELKAGVNKS
IRVLVAEKRKITVGDKMSGRHGNKGVVSRVLPAEDMPFLEDGTHLDVVLNPLGVPSRMNI
GQVLEVHLGMAMRSLNGGTCIATPVFDGATEEQVKDYLEKQGYPRTGKVTLYDGRTGEKF
DNKVTVGIMYMLKLHHLVEDKMHARAIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAY
GASNILQEMLTVKSDDITGRTKTYEAIIKGEAMPESDLPESFKVLLKEFQALALDIELCD
EEDNVINVDEEIGIEDTPTEYSPQYEIEMTGLHEIDEDAEDFEE
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaaaactcattgaaagacttgattttggaaaaataaaacctaggggtcaaatgcct
cattttcttgaattccaattaaattcttatgaagattttttacaaactaatgtgtcccca
aataaaagagaggaaaaaggatttgaactagcattcaaagagatattcccaatagaatct
tcaaatggagatgtaaggctagaatatataggatatgaattacatgaagcagaagcacca
ttaaatgatgaacttgaatgtaaaaaaagaggtaagacatattctaattcattgaaagtt
agattaagacttataaacaaaaaaatgggaaatgaaatccaagaatctttggtatatttt
ggagaagttcctaaaatgacagatagagcaacatttataataaatggagcagaaagagtt
gttgtatctcaattacatagatcaccaggtgtatcttttagtaaagaagttaatactcaa
acaggtaaggatttattttctggaaaaataattccatataaaggaacttggttagaattt
gagactgataaaaatgactttttaagtgtaaagatagatagaaagaaaaaagttttagca
actgtatttttaaaagcagtagatttctttaaagataataatgaaattagagattatttc
ttagaaactaaggaattaaatttaaaaacactttataaaaaatattcaaaagaaccagaa
gaattattaaatgttttaaaacaagaattagatggctcaatagttaaagatgatatactt
gatgaagaaacaggagaatttattgctgaaacagaagcttttataaatgaagaagtaata
aataacttgatagaaaataaggtagataaaatttcttattggtatgtaggacctgaaagt
aaattagttgcaaatactttgatgaatgacacaactttaacagaggatgaagctgttgta
gaagtatttaaaaaattaagaccaggggatcaagtgactgttgactcggctagaagcttg
ataagacaaatgttctttaacccacaaagatatgatttagaacctgtgggtagatataag
atgaacaaaagattaaagcttgatgttccagaagatcaaatttcattgacaaaagaagat
gttttgggaactattaaatatgtaatagagcttaataatggtgatcaaaatgttcatact
gatgatatagacaacctatcaaataggcgtatcagaggagtaggagaattacttcttatg
caaatcaaaacaggacttgctaagatgaataaaatggttagagaaaaaatgactacacaa
gacatagaaacggtaactcctcagtcattgttgaatactagaccattaaatgctttaatt
caagatttctttggttcagggcaattatcacaatttatggatcaatcaaatccacttgct
gaattaactcataagagaagaatatcagcattaggacctggtggactttcaagagaaaga
gcaggatttgaagtaagagacgttcacgattctcactatggaagaatttgtccgatagaa
acaccagaaggaccaaatattggacttattggatcacttgctacttatgctaagattaat
aaatatggatttattgaaacaccttatgtaaaagtagaaaatggagtagcattagttgat
gatgttcattatcttgcagctgatgaagaagatggattattcatagctcaagctgatact
aaacttgataaaaataataaattacaaggtttagtagtttgtagatatggacatgaaatt
gttgaaatagaacctgaaagagtaaactatatggatgtttctcctaaacaagtggtatct
gtatcagcagggcttataccatttttagaacatgacgatgccaacagagcattgatgggg
tcaaacatgcaaagacaagctgtacctttgttaaaatcagaagctccttttataggaaca
ggacttgaaagaaaggttgcagtagactcaggtgcagtagtaactacaaaagtatcagga
aaagtaacttatgtagatggtaaaaaaataataattgaagataaagataaaaaggaacat
atatatagacttttaaactatgaaagatctaaccaatcaatgtgtttacaccaaacaccg
ttggttgatttaggtgataaagtaaaagctggagatataattgcagatggacctgctaca
aaattaggagatttatcattaggaagaaatattcttatgggctttatgccatgggaagga
tataactatgaagatgctatcctaatttctgatagacttagaaaagatgatgtatttaca
tctatacatatagaagaatatgaaatagatgcaagaactacaaaattaggagatgaagaa
attacaagagaaattcctaatgtgtcagaaagtgctttaagaaacctagatgaaaatgga
gtaattatggtaggttcagaagtaggaccaggggatatattagttggtaagacagcacct
aagggagaaacagaaccaccagcagaagaaaaacttttaagagctatatttggagaaaaa
gcaagagatgtaagagatacatcacttactatgcctcatggttctaagggagttgttgtt
gatattcttgaactttcaagagaaaatggagatgaattaaaggcaggagtaaataaatct
ataagagtcttagttgctgaaaagcgtaaaataactgttggagataagatgtcaggaaga
catggaaacaaaggggttgtttcaagagtattgccagcagaagatatgcctttcttagaa
gatggaactcacttggatgttgtgttaaatcctcttggagtgccatctcgtatgaatata
gggcaagttcttgaagtacacttaggtatggcaatgagaagtctaaatggaggaacttgt
atagctacaccagtatttgatggtgcaacagaagaacaagtaaaagattatcttgaaaaa
caaggatatccaagaacaggaaaagtaactttatatgatggaagaacaggagaaaagttt
gataataaagttacagttgggataatgtatatgttaaaattacaccatcttgttgaagat
aaaatgcatgctagagcaataggaccttattcattggtaactcaacaaccacttggaggt
aaggcacaatttggtggacaaagacttggagaaatggaagtttgggcattagaagcttat
ggagcatctaatatacttcaagaaatgttaactgtaaaatcagatgatattacaggaaga
accaaaacttatgaagctataattaaaggtgaagctatgccagaatcagatttaccagaa
tcttttaaagtgcttttaaaagaattccaagcattagcactagatatagaattatgtgat
gaagaagataatgttataaatgttgatgaagaaataggaatagaagatactccaacagaa
tactcaccacaatatgaaatagaaatgactgggcttcatgaaatagatgaagatgcggaa
gattttgaagagtaa
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