Fusobacterium vincentii 3_1_27: HMPREF0405_02137
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Entry
HMPREF0405_02137 CDS
T03625
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fnt
Fusobacterium vincentii 3_1_27
Pathway
fnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0405_02137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fnt03019
]
HMPREF0405_02137
03009 Ribosome biogenesis [BR:
fnt03009
]
HMPREF0405_02137
Enzymes [BR:
fnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HMPREF0405_02137
Messenger RNA biogenesis [BR:
fnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMPREF0405_02137
Ribosome biogenesis [BR:
fnt03009
]
Prokaryotic type
rRNA helicases
HMPREF0405_02137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DeaD_dimer
AAA_22
NDK
2H-SAK
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AHI52240
LinkDB
All DBs
Position
1:complement(228012..229598)
Genome browser
AA seq
528 aa
AA seq
DB search
MEQLEKLKEFRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKT
AAFSLPIIENFENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQR
KLIKTGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNE
DKRMLFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCRI
IDLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINIL
VATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQ
IQKAVKKEIKKEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENI
VASLLKLSYSDVLDESNYNEISPVKMEDTGKTRLFIAMGRKDGMTPKKLVEFIVKKAKVK
QSYIKNAEVYEGFSFVSVPFKEAEIIVEAFAKNRKGKKPLIEKAKSKK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggaacaattagaaaaattaaaagaatttagagaattagggcttagtgaaaaggtatta
aaggtattatcaaaaaaaggatatgaatctcctactcctatacaaagattaacaatacct
gcacttttaaaaaatgataaagacataataggacaagcacaaactggaacaggtaagact
gctgctttttctttaccaataatagagaactttgaaaacttagaacatatacaagcaatc
gttttaacaccaacgagagaattagctttacaagttgccgaagaaatgaatagtttaagt
acaagtaaaaagatgaaagtaattcctgtctatggtggacaatcaatagacatacaaaga
aaacttatcaaaactggtgtagatgtggttgtgggtacacctggtagagttatagattta
attgaaagaaaattattgaaattaaattcattaaaatatttcattttagatgaagcagat
gaaatgcttaatatgggttttgttgaagatatagaaaaaatattaacttttacaaatgaa
gataaaaggatgttatttttctctgcaactatgcctgatgaaattatgaaagtcgctaaa
aatcatatgaaagaatatgaagttttagctgttaaaagtagagaacttacaacagattta
actgaacaaatatattttgaagtaaatgaaagagataagtttgaagcactatgtagaatt
atagatttaacaaaagaattttatggaattattttttgtagaacaaagactgatgtaaat
gaaattgttggaagattaaatgacagaggttatgatgctgaaggtctacatggagatata
ggtcaaaattatagagaagttactttaaaaagatttaaaactaagaaaataaatattctt
gttgcaacagatgtggctgcaagaggtatagatatcaacgatttaagccatgttataaac
tatgctattccacaagaagttgaaagttatgtacatagaataggtagaacagggcgtgct
ggtaaagaaggtactgctataacttttataaccccacaagagtatagaagacttttacaa
attcaaaaagcagtaaaaaaagaaattaaaaaagaaaaattacctgatgttaaagatgtt
attcaagctaaaaaatttaggataatagatgatattggacaaattttaatagacaatgac
tatgataaatttaaaaaattagccaaagatttacttaaaatggaagatgcagaaaatatt
gttgcctctcttttaaaattatcatatagtgatgttttagatgaaagtaactacaatgaa
atctctcctgttaaaatggaagatactggtaaaacaaggctatttattgctatgggtaga
aaagatggcatgacacctaaaaaattagttgaatttattgtcaaaaaagcaaaagtaaaa
caaagctatattaaaaatgcagaagtctatgaaggtttctcttttgtttctgtacctttt
aaagaagctgaaataatagttgaagcttttgctaaaaatagaaaaggaaagaagccatta
atagaaaaagcaaagtctaagaagtaa
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