Fusobacterium nucleatum subsp. nucleatum ATCC 25586: FN0476
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Entry
FN0476 CDS
T00077
Name
(GenBank) Transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
fnu
Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Pathway
fnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FN0476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fnu03021
]
FN0476
03019 Messenger RNA biogenesis [BR:
fnu03019
]
FN0476
Transcription machinery [BR:
fnu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FN0476
Messenger RNA biogenesis [BR:
fnu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FN0476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
AAA_24
OB_RNB
Spore_III_AA
AAA_19
AAA
Rho_N
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AAL94672
UniProt:
Q8RG42
A0ABN5J370
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All DBs
Position
1123590..1124831
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AA seq
413 aa
AA seq
DB search
MDILNKLLLKDLQEIAKVMEIEIGVGQKKDELKRIISNSLEENNTELAYGTLDTAPEGFG
FLKETTLGKNIYMSASQIKRFKLRRGDQVLGEVRKPIGEEKNYAIRRVLKANDNDLAALE
SRVPYEELIPTYPTEQFVLGIEQGNISGRILDLISPIGKGQRALIIAPPKAGKTTFISSI
ANALIEGQKDSEVWILLIDERPEEVTDIKENVEGATVFASTFDDDPKNHIKVTEEIIEKA
KMKVEDGENVVILLDSLTRLARAYNIVMPSSGKLLSGGIDPTALYHPKNFFGAARNIKDG
GSLTIIATILVDTGSKMDEVIYEEFKSTGNCDIYLDRQLAEFRIFPAIDITKSGTRKEEL
LLNKNQIDDIWNLRRLLNDYDNKVSATSALIKAIKTTRNNDELLAQLPKVLYK
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atggatattttaaataaacttcttttaaaagatttacaagaaatagcgaaggttatggaa
atagaaataggtgtaggtcagaagaaagatgaattaaaaagaataatatcaaattctctt
gaagagaataatacagaacttgcctatggtactttggatacagcaccagaaggctttggt
tttttaaaagaaacaacattgggaaaaaatatctatatgtcagcttcacaaattaaaaga
tttaagcttagaagaggtgatcaggtcttaggtgaagttagaaaaccaataggtgaagaa
aagaattatgcaataagaagagttctaaaagctaatgataatgatttagctgcattagaa
agtagagttccatacgaagaattaattccaacttatccaacagaacaatttgtacttggt
atagaacaaggtaatatttcagggagaatattagatttaatatctccaattggaaaggga
caaagagctttaataattgcaccaccaaaggcagggaaaacaacttttataagctctatt
gctaatgctttgatagaaggtcaaaaggattcagaagtttggatattgctaatagatgaa
agacccgaagaagttacagacatcaaagaaaatgtcgaaggagcaacagtctttgcttca
acatttgatgatgatccaaaaaatcatataaaagtaacagaagaaataattgaaaaagct
aaaatgaaagttgaagatggagaaaatgtagtaattttactagattccttaacaagactt
gcaagggcatacaatattgtgatgccttcaagtggaaaactactttcaggagggatagat
ccaacagcactatatcacccaaaaaatttttttggtgcagcaagaaatataaaagatggg
ggaagtttaacaattattgctacaattcttgttgatacaggaagtaagatggatgaagtt
atctatgaagaatttaagtcaacaggaaattgtgatatttatttagataggcaattagct
gaatttagaatttttcctgcaatagatataactaagtcaggaacaagaaaagaagaatta
cttcttaataaaaatcaaatagatgatatttggaatttaagaagattactaaatgactat
gataataaggttagtgctacctcagcactaataaaggcaataaaaacaactagaaacaat
gatgaattattagcacagctccctaaggttctgtacaaataa
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