Fusobacterium nucleatum subsp. nucleatum ATCC 25586: FN0578
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Entry
FN0578 CDS
T00077
Name
(GenBank) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fnu
Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Pathway
fnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FN0578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fnu03019
]
FN0578
03400 DNA repair and recombination proteins [BR:
fnu03400
]
FN0578
Enzymes [BR:
fnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FN0578
Messenger RNA biogenesis [BR:
fnu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FN0578
DNA repair and recombination proteins [BR:
fnu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FN0578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
DegS
Motif
Other DBs
NCBI-ProteinID:
AAL94774
UniProt:
Q8R694
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All DBs
Position
1228081..1229925
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AA seq
614 aa
AA seq
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MVFLVGLKLKAEALKILKEYYGYDNFREGQEKIIDAILEKRNVLGIMTTGAGKSICYQIP
ALIFEGLTIIISPLISLMKDQVDSLRLIGIEASYLNSALTSDEYNKILFRIKRGKIKLLY
ISPERLENKFFLNFIKTVKISMVVVDEAHCVSQWGENFRRSYLRIADFVKYLSGETQIQT
LAFTATATPKIKVDIIEKLNIINPFIYIDYFNRDNIYFKVVDNSGLDKDLDIDSKPFIID
YLRKHKGKSGIIYCSTRKNVDDIYSYLVGFDRSVTKYHGGMSKEEREKNQKLFLDDDIEI
MVATNAFGMGINKSNIRYVIHANIPADLESYYQEAGRAGRDGGSAEAILIYNEKDRDIQR
YLMEKEAEGKTDRNYLNKRLKNFNKMIEYAELKTCYREYILKYFGEKMIRNYCGYCENCK
KEKNIKDFSLEAKKIISGVGRAKESLGISTLANMLMGKADTKMLNKGLDKISTFGIMKED
KQEWIESFINYMISEKYLIQSAGSFPVLKLGEKYKDILNGNIKVIRKEDEKIDFDYYEND
LFKELNSLRKEISKQENIAPYIIFSDMTLIEMAEKKPRNRWDMLKIKGIGNQKFKSYGEK
FLERIINYCMEERI
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggtatttttggtgggattaaaattgaaagcagaagcactcaaaattttaaaagaatat
tatggttatgacaattttagagaagggcaagagaaaataatagatgctatcttagagaaa
agaaatgttttagggataatgacaacaggagcaggaaaatctatttgttatcaaatacct
gcactaatctttgaaggattaactataataatttctcctttaatatctttaatgaaagac
caagtggacagtttaagattaattggaatagaggcaagttacttaaattcagccttaaca
agtgatgaatataataaaattctttttagaataaaaagagggaagataaagttattgtat
atctcacctgaaagattggaaaataaatttttcttaaactttataaaaactgtaaaaatt
tctatggtagtagttgatgaggcacattgtgtatctcaatggggggaaaattttagaaga
agttatctaaggatagcggattttgtaaaatatttaagtggagaaactcaaattcaaact
ttggcttttactgctactgcaactcccaaaattaaagtggatataatagaaaaattaaat
ataataaatccatttatttatatagattacttcaacagagataatatctatttcaaagta
gttgataatagtggacttgataaagatttagatatagactctaagccttttataatagat
tatttaagaaaacataaagggaaatcaggaataatttattgttcaactagaaaaaatgta
gatgatatttatagctatttagtaggatttgatagaagtgttacgaaatatcatggtgga
atgtctaaggaagaaagagaaaaaaatcaaaaattgttcttagatgatgatattgaaata
atggtggcaactaatgcttttggtatggggataaataaatctaatataagatatgtaata
catgcaaatatcccagctgatttagaaagttattatcaagaagcaggtagagctggaaga
gatggtggatctgctgaggctatccttatatacaatgagaaagatagggatatccaaaga
tatttaatggagaaagaagcagagggaaaaacagatagaaattacctcaataaaagattg
aaaaattttaataaaatgatagaatatgcagagttaaagacttgttacagagaatatatc
ttaaagtattttggtgaaaaaatgataagaaattattgtggatattgtgagaattgcaaa
aaagaaaagaatatcaaagatttttcactggaagcaaagaaaattatttcgggtgtgggt
agagcaaaggaaagtttaggtatatccacattggctaatatgcttatgggaaaagcagac
acaaaaatgttaaataaagggcttgacaaaatttctacatttgggataatgaaagaagat
aagcaagagtggatagaaagctttataaattacatgatttctgaaaaatatttaatacag
agtgcaggaagttttccagttctaaaacttggtgagaagtataaagatattttaaatgga
aatataaaagtaataagaaaagaagatgaaaaaattgactttgattattatgaaaatgat
ttatttaaagaattaaattctcttagaaaagagatttcaaagcaagaaaatattgcacct
tatattattttttctgatatgactcttatagagatggcagagaaaaaaccaagaaatagg
tgggatatgttaaaaataaagggtattggcaatcaaaaatttaaaagttatggggaaaag
tttttagaaagaattattaactattgtatggaggagagaatatga
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