Fusobacterium nucleatum subsp. nucleatum ATCC 25586: FN1103
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Entry
FN1103 CDS
T00077
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
fnu
Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Pathway
fnu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fnu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FN1103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fnu03400
]
FN1103
DNA repair and recombination proteins [BR:
fnu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FN1103
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FN1103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
nSTAND1
RsgA_GTPase
AAA_21
AAA_16
AAA_23
nSTAND3
Viral_helicase1
FtsK_SpoIIIE
ATPase_2
AAA_24
DnaJ_CXXCXGXG
cobW
COG3_C
Motif
Other DBs
NCBI-ProteinID:
AAL95299
UniProt:
Q8REJ8
LinkDB
All DBs
Position
1746699..1749581
Genome browser
AA seq
960 aa
AA seq
DB search
MYYKNYIERNSEIKLMIDKITIKGARQHNLKNIDIELPKNEFIVITGVSGSGKSSLAFDT
IYSEGQRRYVESLSAYARQFIGQMNKPEVDSIEGLSPAISIEQKTTNRNPRSTVGTITEV
YDYLRLLFAHIGTAHCPICHTAVEKQSVDEIVESVMTKFDDGSKIILLAPVVKDKKGTHK
NIFLNLFKKGFVRARVNGEVLYLEDEIELDKNKKHNIEVVVDRLVLKKDDKDFESRLTQS
IETAIDLSNGKLIINDGKNDYLYSENYSCPNHEDVSIPELNPRLFSFNAPYGACPECKGL
GKKLEVDENKLIENPELSIEDGGMYIPGAMARKGYSWEIFKAMAKVAKIDLTKPVKDLTQ
KELDIIFYGYDEKFRFDYTGGEFDFHGYKEYEGAVKNLERRYYETFSDAQKEEIENKYMV
ERICKVCNGKRLKDEVLAVTVNGKNIMEICDMSIKNSLDFFINMNLTEKQEKIAKEILKE
IRERLTFMTNVGLDYLTLSRETKTLSGGESQRIRLATQIGSGLTGVLYVLDEPSIGLHQK
DNDKLLATLNRLKELGNTLIVVEHDEDTMMQADKILDIGPGAGEFGGDIVAFGSPKEIMK
NKDSITGKFLSGKEAIDIPKKRRKWDKSIKLYGAKGNNLKNIDVEFPLGVMTVVTGVSGS
GKSTLINSTLYPILFNKLNKGKLYPLEYKKIEGLNALEKVINIDQTPIGRTPRSNPATYT
KLFDDIRDIFAETQDAKLHGFKKGRFSFNVKGGRCEACQGAGILKIEMNFLPDVYVECEV
CKGKRYNKETLDVYYKGKNIYDVLEMSVLEAYEFFKNIPSLERRLKVLIDVGLDYIKLGQ
PATTLSGGEAQRIKLATELSKMSKGNTVYILDEPTTGLHFQDIKKLLEVLNRLLEKGNTV
IIIEHNLDVIKTADHIIDIGVDGGENGGTVVATGTPEEITKSKKSYTGKYIAKILKNKTK
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgtattataaaaattatattgaaaggaatagtgaaattaagctaatgatagataaaatt
actataaagggagcaaggcaacataatttaaaaaatatagatattgagcttcctaaaaat
gaatttattgttataacaggtgtgagtggaagtggaaaatcatctcttgcctttgataca
atttattcagaaggacaaagaagatatgtggaaagtctttcagcttatgcaagacaattt
ataggacaaatgaacaaaccagaagttgatagtatagaaggtttatctcctgcaatctca
atagaacaaaaaacaacaaatagaaaccctcgttcaacagttgggacaattacagaagtt
tatgattatttgagacttttatttgcacatataggaactgcacactgtccaatttgtcat
acagccgttgaaaaacaaagtgtagatgaaattgttgaaagtgttatgacaaaatttgat
gatggaagcaaaattattttattagcacctgttgttaaagataaaaaaggtactcataaa
aatatatttttaaatttatttaaaaagggctttgtaagagcaagagtaaatggtgaagta
ctttatttagaagatgaaatagaacttgataagaataaaaaacataatatagaagttgtt
gtagatagattagttttaaaaaaagatgataaggactttgaaagtagattaactcaatca
atagaaactgcaatagatttatcaaatggaaaattaattataaatgatggaaaaaatgat
tatctatatagtgaaaattattcttgtcctaatcatgaagatgtaagtattcctgaatta
aacccaagactattttcatttaatgcaccttatggagcatgtcctgaatgtaaaggttta
ggaaaaaaattagaagttgatgaaaataaattaatagaaaatcctgaactatctattgaa
gatggaggaatgtatattccaggggctatggcaagaaaaggatatagttgggaaattttt
aaagctatggcaaaagtggctaaaattgatttaactaaacctgttaaagatttaactcaa
aaagagttagatataatattctatggctatgatgaaaaatttagatttgactatactggt
ggagaatttgattttcatggctataaagagtatgaaggagctgttaaaaacttagaaaga
agatactatgaaactttctcagatgcacaaaaagaagaaattgaaaataaatatatggta
gaaagaatttgtaaagtttgtaatggaaaaagattaaaagatgaagttttagcagtaact
gtcaatggaaaaaatattatggaaatctgtgatatgagtattaaaaactcacttgatttc
tttataaatatgaatttaactgaaaagcaagaaaaaattgctaaggaaattctaaaagaa
ataagagaaagattgacatttatgactaatgttggtttagattatttaacactttcaaga
gaaactaaaactttatcaggtggagaatctcaaagaataagacttgcaactcaaataggt
tctggacttacaggtgtcctatatgttttagatgagccaagcataggattacatcaaaaa
gataatgataaattacttgcaactttaaatagacttaaagaattaggaaatactttaata
gtggttgaacatgatgaagatactatgatgcaagcagataaaattctggatattggacca
ggagctggagaatttggtggagatattgtagcctttggaagtccaaaagaaataatgaaa
aacaaggactctatcacaggaaaatttttaagtggtaaagaagcaattgacattcctaaa
aaaagaagaaaatgggataaatccattaaactttatggtgcaaaaggaaataatttaaaa
aatattgatgtagaatttccattaggggttatgactgttgttactggagtaagtggaagt
ggtaaatcaactcttataaactcaactctttatccaattttatttaataaattaaataaa
ggaaagttatatccattagaatataaaaaaattgaaggcttaaatgctttagaaaaagtt
atcaatatagatcaaactccaataggaagaactccaaggtctaacccagcaacttataca
aaactttttgatgacataagagatatttttgctgaaactcaagatgcaaaacttcatgga
tttaaaaaaggtagattttcatttaatgttaaaggtggaagatgtgaagcttgtcaaggt
gcaggaatattaaaaattgaaatgaatttcttacctgatgtctatgttgaatgtgaagtt
tgtaagggaaaaagatataataaagaaacattggatgtgtattacaaaggtaaaaatatt
tatgatgtcttagagatgagcgtacttgaagcttatgaattctttaaaaatattccatct
ttggaaagaagattaaaagttttaatagatgtagggttagactatataaagttagggcag
cctgcaacaactctatctggtggagaagcacaaagaattaaacttgcaactgagctttca
aagatgagtaaaggaaatactgtatatattttagatgagcctacaacaggtttacatttc
caagatataaaaaaattattagaagttttaaatagacttttagaaaaaggtaacactgtt
ataataattgagcataatcttgatgttataaagactgctgaccatataatagatattggt
gtagatggtggagaaaatggtggaactgttgttgctactggaacaccagaagaaattacc
aaatctaaaaaaagttatacagggaaatatattgctaaaattttaaaaaacaagacaaaa
tag
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