Fusobacterium nucleatum subsp. nucleatum ATCC 25586: FN1210
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Entry
FN1210 CDS
T00077
Name
(GenBank) Metal dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fnu
Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Pathway
fnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FN1210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fnu03019
]
FN1210
Messenger RNA biogenesis [BR:
fnu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FN1210
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AAL95406
UniProt:
Q8R638
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All DBs
Position
complement(1869030..1870856)
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AA seq
608 aa
AA seq
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MSIKDDVQHLKTKKTKKKVEKNITEKTKKQKEEVKKNEVVQNNNKKVKTSKKDLDKMYVI
PLGGLEEVGKNCTIIQYKDEIIIVDAGAIFPDENLPGIDLVIPDYTFLENNKSKVKGLFV
THGHEDHIGGIPYLYEKIEKDTVIYAGKLTNALIKSKFENFGVKKALPKMVEVGSRSKVS
VGKYFTVEFVKVTHSIADSYCLSVKTPAGHVFLTGDFKIDLTPVDNEKVDFMRLSELGEE
GVDLMLSDSTNSEVEGFTPSERSVGDAFRQEFQKATGRIVIAVFASHVHRIQQIIDTAAH
FKRKIAIDGRSLLKVFEIAPSVGRLTIPKNLLIPISSVDKYDDDEIVILCTGTQGEPLAA
LSRIAKNMHKHIALREGDTVIISSTPIPGNEKAVSTNINNILKYDVDLVFKKIAGIHVSG
HGSKEEQKLMLNLINPKHFMPVHGEYRMLKAHMRSAIETGVPKDKILLTQNGDKVEVTKE
YAKINGKVNSGEILVDGLGVGDIGSKVIKDRQQLSEDGIVIVAYSIDKETGKIVSGPEMS
TKGFVYYKDSEDTIKEAQDLLSKKINKNETYLGRDWADLKGHVRDLLSRFFYEKLKRNPI
ILPMLLEI
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgagtattaaagatgatgttcaacatttaaaaactaagaaaactaaaaagaaagtagaa
aaaaatataacagaaaaaactaaaaaacaaaaagaagaagttaaaaaaaatgaagtagtt
caaaataataacaaaaaagtcaaaacttcaaaaaaagatttggataaaatgtatgttatt
ccactaggtggtttagaagaagtcgggaaaaactgtactataattcaatataaagatgaa
ataattattgtggatgcaggagcaatatttccagatgaaaatttacctggtatagattta
gtaattccagattatacttttttagaaaataataagtctaaggttaaaggcttatttgta
acacatggacatgaggatcatattggtggaattccttatctatatgaaaaaatagaaaaa
gatacagtaatttatgctgggaaattgacaaatgctttgattaaatctaaatttgaaaat
tttggagtaaaaaaagctttaccaaaaatggttgaagttggttcaagaagtaaagtaagt
gttggaaagtattttacagttgaatttgtaaaagtaacacactcaatagcagattcatat
tgtttatctgtaaaaacaccagcaggacatgtatttttaacaggagattttaaaatagat
ttaactcctgttgacaatgaaaaagtagattttatgagattatcagaattaggtgaagaa
ggggtagatttaatgctatcagattcaactaactctgaggtcgaaggttttactccttct
gaaagaagtgttggagatgcttttagacaagaatttcaaaaagctactggaagaatagtt
atagcagtatttgcctcacatgttcatagaatacaacaaattatagatacagcagcacat
tttaaaagaaaaattgctattgatggaagaagcctattaaaagtatttgaaatagcaccc
agtgttggaagattaactatacctaaaaatttacttattcctatatcatcagttgataaa
tatgatgatgatgaaattgtaatattatgtacaggcacacaaggagaaccattggcagct
ctttcaagaatagctaaaaatatgcataaacatatagctttaagagaaggagatactgta
ataatttcatctactcctataccaggaaatgaaaaagcagtttcaacaaatataaataac
attttaaaatatgatgttgatttagtttttaaaaagattgcaggtatacatgtatcagga
catggtagtaaagaagaacaaaaattaatgttaaatttaataaatccaaaacattttatg
ccagttcatggcgaatatagaatgcttaaagcacatatgagatcagctattgaaacagga
gtgccaaaggataaaattcttttaactcaaaatggagataaagttgaagttacaaaagaa
tatgcaaaaataaatggtaaagtaaattctggtgaaatcctagttgatggtttaggtgtt
ggagatattggaagtaaggttataaaagatagacaacaattatcagaagatggaatagtt
atagttgcatattctattgataaagaaacaggaaaaatagtctcaggtcctgaaatgtca
acaaaaggttttgtatattataaagattcagaagatactataaaagaagcacaagattta
ttaagtaaaaaaatcaataaaaatgaaacttacttaggtagggattgggcagatttaaaa
ggacatgtaagagatttactatcaagatttttctatgaaaaattaaaaagaaacccaatt
attttacctatgctattagaaatataa
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