Fusobacterium nucleatum subsp. nucleatum ATCC 25586: FN2035
Help
Entry
FN2035 CDS
T00077
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fnu
Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Pathway
fnu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fnu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FN2035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fnu03021
]
FN2035
03400 DNA repair and recombination proteins [BR:
fnu03400
]
FN2035
Enzymes [BR:
fnu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FN2035
Transcription machinery [BR:
fnu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FN2035
DNA repair and recombination proteins [BR:
fnu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FN2035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AAL94120
UniProt:
Q8RHI7
LinkDB
All DBs
Position
complement(538912..542871)
Genome browser
AA seq
1319 aa
AA seq
DB search
MGIRNFEKIRIKLASPEKILEWSHGEVTKPETINYRTLNPERDGLFCEIIFGPTKDWECS
CGKYKRMRYKGLVCEKCGVEVTRAKVRRERMGHITLASPVSHIWYSKGSPNKMSLIIGIS
SKELESVLYFARYIVTSSQESTVEVGKILTEKEYKLLKQLYGNKFEAYMGADGILKLLTA
IDLEKLRDELENELAEANSAQKRKKLVKRLKIVRDFIASGNRPEWMILTNVPVIPAELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLEIRAPEIVVKNEKRMLQEAVDALIDNGR
RGKPVVAQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPSLKMNQCGIPKK
MALELYKPFIMRELVRRELANNIKMAKKLVEESDDKVWAVIEDVIADHPVLLNRAPTLHR
LSIQAFQPVLIEGKAIRLHPLVCSAFNADFDGDQMAVHLTLSPESMMEAKLLMFAPNNII
SPSSGEPIAVPSQDMVMGCFYMTKERPGEKGEGKLFSNIEQVITAYQNDKVGTHALIKVR
MNGELIETTPGRVLFNEILPEIDRNYHKTYGKKEIKSLIKSLYEAHGFTETAELINRVKN
FGYHYGTFAGVSVGIEDLEVPPKKKSLLNQADKEVAQIDKDYKSGKIINEERYRKTIEVW
SRTTEAVTDAMMKNLDEFNPVYMMATSGARGNVSQMRQLAGMRGNMADTQGRTIEVPIKA
NFREGLTVLEFFMSSHGARKGLADTALRTADSGYLTRRLVDISHEVIVNEEDCHTHEGIE
VEALVGANGKIIEKLSERINGRVLAEDLVHKGKKIAKRNTMIHKDLLDKIEELGIKKVKI
RSPLTCALEKGVCQKCYGMDLSNYNEILLGEAVGVVAAQSIGEPGTQLTMRTFHTGGVAG
AATVVNSKKAENDGEVSFRDIKTIEINGEDVVVSQGGKIIIADNEHEVDSGSVIRVTEGQ
KVKEGDVLVTFDPYHIPIISSHDGKVQYRHFTPKNIRDEKYDVHEYLVVRSVDSVDSEPR
VHILDKKNEKLATYNIPYGAYMMVRDGAKVKKGDIIAKIIKLGEGTKDITGGLPRVQELF
EARNPKGKATLAEIDGRIEILTTKKKQMRVVNVRSLENPEEFKEYLIPMGERLVVTDGLK
IKAGDKITEGAISPYDVLNIKGLVAAEQFILESVQQVYRDQGVTVNDKHIEIIVKQMFRK
VRIIDSGASLFLEDEVIEKRVVDLENKKLEEQGKALIKYEPVIQGITKAAVNTGSFISAA
SFQETTKVLSNAAIEGKVDYLEGLKENVILGKKIPAGTGFNKYKSIKVRYNTDDKPEEE
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgggaataagaaattttgaaaaaattagaataaaattagcatctcctgaaaaaatatta
gaatggtctcatggggaagtaacaaagcctgaaactataaattatagaacacttaatcct
gaaagagatggattattctgtgaaataatatttggaccaacaaaagattgggaatgttct
tgtggaaaatataagagaatgagatataaaggcttagtttgtgaaaaatgtggagttgaa
gtaacaagagctaaagttagaagagaaagaatgggacatataactttagcatctcctgtt
tctcatatttggtattcaaaaggaagcccaaataagatgtctctaattataggtatctca
tcaaaagaattggaatcagttttatattttgcaagatatatagtaacttctagtcaagaa
tcgactgttgaagttggaaaaatattgacagaaaaagaatacaaattattaaaacaacta
tatggaaataagtttgaagcatatatgggagcagatggaattttaaaactgcttacagct
attgatttagaaaaactaagagatgaattagaaaatgaattagcagaagctaattctgct
caaaaaagaaaaaaacttgtaaaaagattaaaaatagttagagattttatagcttctgga
aatagacctgaatggatgatacttacaaatgttcctgtaattccagcagaacttagacca
atggttcaacttgatggtggaagatttgcaacttcagatttaaatgatttatatagaaga
gttatcaatagaaataatagacttaaaaaattattagaaataagagctccagaaattgtg
gtaaaaaatgaaaaaagaatgctacaagaagcagtagacgctcttattgacaatggtaga
agaggtaaaccagtagttgctcaaaataatagagaattaaaatctttatctgatatgtta
aaaggaaaacaaggaagatttagacaaaacttactaggaaaaagagttgattattcagca
agatcggttatagttgttggaccatctttaaagatgaatcaatgtggtatacctaagaaa
atggctcttgaattatataaaccatttataatgagagaattagtaagaagagagttagct
aacaatataaaaatggctaaaaaattagttgaagaatctgatgataaagtttgggcagta
atagaagatgttattgcagatcaccctgtacttttgaacagagcccctacattacataga
ttatcaatacaagcattccaacctgtattgatagaagggaaagctataagattacatcca
cttgtttgttctgccttcaatgctgactttgatggagaccaaatggctgtacacttaact
ttatctcctgaatcaatgatggaagctaagcttttaatgtttgctcctaataatattatt
tctccatctagtggggaacctattgcagtcccatctcaagatatggtaatgggatgtttc
tatatgacaaaagaaagaccaggagaaaagggagaaggtaaactattctctaatatagaa
caagttattactgcttatcaaaatgataaagtaggaactcatgctctaataaaagttaga
atgaatggagaattaattgaaacaactcctggaagagtattatttaatgaaattttacca
gaaatagatagaaattatcataaaacttatggtaaaaaagaaataaaatctttaattaaa
tctttgtatgaagcacatggttttactgaaacagcagaacttatcaatagagttaaaaac
tttggatatcattatggtacctttgcaggagtttcagtaggaattgaagatttagaagtt
ccacctaaaaagaaatctttattaaatcaagcagataaagaagttgctcaaatagacaaa
gattacaaatctggaaaaattataaacgaagaaagatatagaaaaacaatagaagtatgg
tcaagaacaactgaagcagttactgatgcaatgatgaaaaacttggatgaatttaaccca
gtttatatgatggcaacatcaggagccagaggtaatgtaagtcaaatgagacaattagct
ggaatgagaggaaacatggcagatacacaaggtagaaccatagaagttcctataaaagct
aatttcagagaaggactaacagtattggaattctttatgtcttcacatggagcaagaaaa
ggtcttgccgatacagcactaagaactgccgattcaggatatttaacaagaagacttgtt
gatatttctcatgaagttatagtaaatgaagaagattgtcatactcatgaaggaatagaa
gttgaagcacttgttggagcaaatggtaagataattgaaaaattaagtgaaagaattaat
ggtagagttttagcagaagaccttgttcataaaggaaagaaaattgctaaaagaaatact
atgattcataaagatttattagataaaattgaagaattaggaattaaaaaagtaaaaata
agatctcctttaacttgtgcattagaaaagggagtttgtcaaaaatgttatggtatggac
ttatcaaactataatgaaatattactaggagaagctgttggagtagttgctgctcaatca
ataggagaaccaggtacacagcttacaatgagaactttccatacaggaggagttgctgga
gctgcgactgttgtaaattctaaaaaagcagaaaatgatggagaagtttcatttagagat
attaaaactattgaaatcaatggagaagatgtagttgttagccaaggtggaaaaattatt
atagcagacaatgaacatgaagtggattcaggttcagtaataagagtaacagaaggacaa
aaagtaaaagaaggagatgtacttgttacatttgacccttaccatattcctataatctca
tctcatgatggaaaagtacaatatagacattttactcctaaaaatataagagatgaaaaa
tatgatgttcatgaatatctagttgtaagatctgttgatagtgttgactcagaaccaaga
gtacatatacttgataagaaaaatgaaaaattagctacttataatattccttatggagca
tatatgatggtaagagatggagctaaagtaaaaaaaggtgatatcatagctaagattatc
aaattaggagaaggtactaaggatattactggtggtcttccaagagtacaagaattattt
gaagcaagaaatccaaaaggaaaagcaacacttgcagaaatagatggaagaatagaaata
ctaacaactaagaaaaaacaaatgcgtgtcgttaatgttagatcattagaaaatccagaa
gaatttaaagaatatttaattcctatgggagaacgtctagttgttactgatggattaaaa
ataaaagcaggagataagataacagaaggagctatttctccttatgatgtattgaatatc
aaagggcttgtagcagctgaacaatttatacttgaatctgtacaacaagtatatagagat
caaggggttacagttaatgataaacatatagaaattattgttaagcaaatgtttagaaaa
gttagaattattgactctggtgcatctctattccttgaagatgaagttatagaaaagaga
gttgtagatcttgaaaacaagaaattggaagaacaaggaaaagcacttattaaatatgaa
ccagttatacaaggtattacaaaggctgcagtaaatactggaagctttatatctgctgct
tcattccaagaaacaacaaaagtattatcaaacgctgctattgaaggaaaggttgattac
ctagaaggattgaaagaaaatgtaattttaggtaagaagattccagcaggaacaggattt
aataagtataagtctataaaagttagatataatactgatgataaaccagaagaggaataa
DBGET
integrated database retrieval system
