Frankliniella occidentalis (western flower thrips): 113201841
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Entry
113201841 CDS
T07591
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03008
Ribosome biogenesis in eukaryotes
foc03013
Nucleocytoplasmic transport
foc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113201841
03015 mRNA surveillance pathway
113201841
03008 Ribosome biogenesis in eukaryotes
113201841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foc03019
]
113201841
03009 Ribosome biogenesis [BR:
foc03009
]
113201841
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113201841
mRNA cycle factors
Stress granule specific factors
113201841
Ribosome biogenesis [BR:
foc03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
113201841
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NXF_NTF2
LRR_NXF1-5
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_8
LRR_6
LRR_LRWD1
UBA_8
LRR_EndoS
LRR_Zer-1
LRR_9
Motif
Other DBs
NCBI-GeneID:
113201841
NCBI-ProteinID:
XP_026271577
UniProt:
A0A6J1RRK8
LinkDB
All DBs
Position
Unknown
AA seq
644 aa
AA seq
DB search
MSNRGSGRPFTKSYYEHDNRGAEGRTGRSVSFKSSTGGNPSRGGINSRNRSRNNGKTWTK
QIQNYLTHDGDYDMGGNGPRNDFSHPVDGRRKYNNNRRRGGNGRQHSPAPNRSFRRLPTS
STFWYKIIVPHAGRYDKKWLIDTLNASLVPTTFTPIGFHHEAQGKDTVVFYLDDFQAASK
LSNMDKRISTEDGFKLMVLVRPLNNLNIVLNEPLKETIKTVMAKRFRPDVKSLDLSRFHS
DPELEGKFVPLNQRTVFSCVLSLVVEHCPSLHALDLSHNQIYSLEGVKTLVSKLSNLRIL
HLANNQLEKISGLDALKGLGVEELLMTSNPVCGKYAEQGAYVTDVRKRLPKLLKLDSVDL
PPPILFDVETTQIPPSRGSYLCAEEGKDIARQFLEQYYALYDSANREPLRDAYHASAMLS
MSCNYPSSHSQGPKEKAMLHAYKSNNRNLKQVMDLDRRVRLLMCGHEEIMKHLCSLPASQ
HDPNSFAVDLLLYTPQLIQLCVCGVFREARGTAHSPMRAFSRSLIIVPQGQGFCIVNETI
TVTNATSAQANAAFKTSLVPVAPAPLVSAPVVPLVPVPVSPVGIVNQDLEAKRQMVEHVV
RTTGMNLIWSEKCLLESNWNLEQALFAFAEYHRQGSIPEEAFAR
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatcgtggatcaggaagaccgtttaccaaaagttactacgaacatgacaaccga
ggagctgaaggacgtactggacgatctgtgagcttcaagtcttcaactggtggtaatccc
agtcgtggcggcattaactcacgcaacagaagtaggaacaatggaaaaacttggactaag
cagatacagaactacttgacgcatgatggtgattatgatatgggtggaaatggaccaaga
aatgatttcagtcatccagttgatggaagaagaaagtataacaataatagaagacgggga
ggaaatggcagacaacactctcctgcacctaatcgctccttcagacgcttacctaccagt
tcaactttttggtacaaaattattgttccacatgctggaagatatgacaagaaatggttg
attgacacattaaatgcaagtttagtccctacaaccttcacaccaattggattccaccat
gaggcccagggtaaagatacagttgtcttttatcttgatgattttcaagcagcttcaaaa
ctaagcaacatggataaaaggatttcaactgaagatgggtttaaacttatggttttggtg
cgaccactaaacaatctgaacatagttctaaatgaaccgttgaaggagaccattaaaact
gttatggctaaaagatttaggccagatgttaaatcacttgatttgtcccgttttcatagt
gatccagagctggaaggcaaatttgtgcctctaaatcaaaggacagtgttttcatgtgtt
ctgtcacttgtagttgaacactgcccttccttacatgcattagatctttctcacaatcag
atttattcactagaaggtgtgaaaacgctagtctccaaactttccaatttacggattctt
catttagccaataaccagttggagaaaatttctggactagatgctctgaaagggcttgga
gtcgaagaactgctcatgacatcaaatcctgtctgtggcaaatatgctgaacaaggagct
tatgtcacagatgttagaaaaagacttcctaaactccttaaattggatagtgtagatctg
ccacctccaatattatttgacgtagagactacacagatccctccatccagaggcagttat
ttatgtgcagaagaggggaaggacatagctcgccagtttttggaacaatactatgcactt
tatgacagtgccaatagagagcctttaagagatgcgtaccatgccagtgccatgctctca
atgtcttgtaactatccatcttctcacagtcaaggacctaaggagaaagccatgttacat
gcatacaagtctaataatcgaaatctgaaacaagtgatggatttagaccgtcgtgttcga
ttgcttatgtgtggccatgaagaaatcatgaagcatctatgtagtctgcctgcaagtcaa
catgatccaaattcttttgccgttgacttacttctttacactccacaacttatacaactc
tgtgtttgtggagttttccgtgaagctcgtggtactgcccattcacctatgcgagcattc
agcagaagtctcatcatagttcctcaaggtcaaggtttctgtattgttaatgaaacaata
acagtaaccaatgctacaagtgctcaggccaatgctgctttcaagaccagccttgtacca
gttgctccagcaccattagtatcagcacctgttgttccactggtgcctgtgcctgtatca
ccagtgggtattgtaaatcaagatttagaagccaaacgtcaaatggttgaacatgttgtc
agaactactggtatgaacctcatatggtcagaaaaatgcttattagaatcaaactggaat
ttggagcaggctttgtttgcattcgcagaataccacagacaaggaagtatacctgaagaa
gcctttgcacgttga
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