Frankliniella occidentalis (western flower thrips): 113202477
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Entry
113202477 CDS
T07591
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc04382
Cornified envelope formation
foc04512
ECM-receptor interaction
foc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113202477
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113202477
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113202477
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
foc04147
]
113202477
00536 Glycosaminoglycan binding proteins [BR:
foc00536
]
113202477
Exosome [BR:
foc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113202477
Glycosaminoglycan binding proteins [BR:
foc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113202477
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113202477
NCBI-ProteinID:
XP_052129579
UniProt:
A0A9C6X5N8
LinkDB
All DBs
Position
Unknown
AA seq
1925 aa
AA seq
DB search
MRSDVSAKRAPQKGEKPNRPRLRADYWLAIITIGPQAAPNDTSAGQSQGVGLYNRRVPEG
YEDTRRYEEYEEQRRRQEEEAARYYAALAASGGGSSGGSSGGSSGGGGARGAARGDAYDR
SSAGEASYGYGSSSGGGGGGGAYGSSSGGGGAYGGSSGGGGAYGGSSGGGGAYGSSSAGA
YGGSSGGERGDGGLRSGSYDLVAASGVEAARRNGTGAACAPKCFAEKGSRGPPGMTGLPG
PKGQQGFTGQEGLPGSKGDKGESGPAGPRGPKGDRGRAGMPGFPGISGVPGTMGPPGLPG
RPGMDGCNGTDGAPGLTGLQGEQGPRGFPGPSGVKGDKGEAAYAGLFPKGQKGEPGRDGV
RGLPGTPGFQGPQGPQGAKGERGPEGPLGPVGIKGDKGQMGLGFEGPAGDKGEKGPPGPP
GDSSYIHMPPGSVVGPVGDKGEKGDRGERGVDGAKGEPGISGAPGGPGEIGKHGEKGLPG
QPGLPGRSGFPGPAGPEGQKGDRGVDGISGLPGRPGLKGEPGHDGPAGLTGLRGPPGPPG
GGKGSPGPPGPQGPRGYPGAPGPKGLDGFDGPQGLRGPQGNPGGPGVPGSPGPEGAPGEK
GSKGDSGLPGFPGEVGPRGYPGPQGPPGLRGLNGEKGHSIPGPKGMDGLPGRDGEKGNKG
ERGFPGLRGFPGDSMEGIPGAPGLPGYPGEKGADGRPGIPGTPGGQGPKGDIGGRCTDCR
PGGPGEKGDRGRDGRDGEPGIMGPAGERGTPGDTGPDGLPGIPGPAGKPGIDGIPGVPGP
EGPAGRDAIVPLNLVKGLPGPPGLRGEPGREGPFGPPGPVGEKGSPGPMGFPGLKGDKGF
PGVRGLDGSPGRPGYPGAKGEKGLSIKGEAGLPGRDGYKGDAGPKGLMGEKGLPGQCPTP
AEIREGIKGERGAEGQRGPQGPTGEPGYPGAKGIQGISGLTGAPGPIGEPGPVGPRGLPG
PRGEKGDLGPMGFPGEKGQDGLPGVPGLPGYKGTKGEAGIPAVGPPGPPGYPGLKGEKGL
PGLSGRFGKDGAPGLPGFAGEKGDLGMPGLNGLPGPQGQKGDPGPFGPDGPPGLPGRPGA
DGTKGEPGQVGLPGRAGQVGFPGPKGEPGPAGFDGPKGFTGQRGAPGAPGTPGMDGQPGV
KGEPGPEGYRGLPGPMGVQGLTGLPGPYGPKGDIGLPGPQGLSGLPGIPGAKGEPGPEGL
PGRKGEPGPVSAKGQKGEAGLPGLRGPPGPKGYDGLTGLKGEPGRPGIGLPGRKGDIGLT
GRPGLDGRPGDKGDRGDMGFPGLKGDPGLAGLQGAPGMPGADGMPGAEGLTGPQGPPGYT
GLKGDEGRPGYPGLNGTKGEMGPPGPAGPLGFPGERGDKGDRGPPGPIVDVKGDKGEPGR
PGLPGLTGDKGVQGLDGLPGPAGEKGDVGLPGGPGLPGAPGYPGAKGEPGLTGPPGFPGL
TVKGEKGLSGLPGKFGAAGLNGYPGEKGDRGLPGLPGRSGQDGLSGLPGQKGDKGNAGLP
GLNGAPGEVGERGLPGREGFPGVPGLKGDVGPPGLYGAPGEKGDAGRPGSPGYSGSPGLK
GDRGLDGFPGAPGPVGPPGEPGLPGPAGLPGAPGRDGAKGEKGESPPLPPPGPKGDRGVA
GLPGRPGARGENGLSGMPGLQGVKGERGSPGLDGPPGLPGLTGDKGDAGLDGPPGQPGLA
GEPGARGIPGASCSAQGDYLTGILLVKHSQSQYVPQCEPGHIKLWDGYSLLYIEGNEKSH
NQDLGFAGSCVRKFNTMPFLFCDFNNVCNYASRNDKSYWLSTTEAIPMMPVEDRQISKYI
SRCTVCEAPANVIAVHSQSLKVPDCPAGWYDLWNGYSFVMHTGAGAEGGGQSLASPGSCL
EDFRATPFIECNGGRGTCHYFANKLSFWLATIEPGQEFSRPNSQTLKAGNLRDRVSRCSV
CIKRT
NT seq
5778 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagtgacgtcagtgcgaaaagggctcctcagaagggcgagaaaccaaatcgccct
cgattaagggccgactattggttggccattatcacaattggaccgcaagccgctccaaac
gacacgtctgcagggcagagccagggggtaggcctgtacaaccggagagtgccggagggg
tatgaggacacgcggcggtatgaggagtacgaggagcagcggcggcgccaggaggaggag
gcggccaggtactacgcggcgttagcggcgagcggcggcggcagctccggtggcagctcc
ggtggcagctccggcggcggtggcgctcgcggcgctgctcgcggcgacgcttacgacaga
agctccgccggcgaggcctcctacggatacggcagcagctccggcggcggcggcggcggc
ggcgcttatggcagcagctccggcggcggcggcgcttacggcggcagctccggcggcggt
ggcgcttacggcggcagctccggcggcggtggcgcttacggcagcagctccgccggcgct
tacggcggcagctctggaggcgaaaggggcgacggcggcctccggagcggcagctacgac
ctggtggcggccagcggcgtcgaggccgcccgcagaaacggcaccggagcggcatgcgcg
cccaagtgcttcgccgagaagggcagcaggggcccccctggcatgaccggcctgccgggt
cccaagggtcagcaaggtttcaccggccaggagggtctgccgggctccaagggtgacaag
ggcgagtctgggcccgcgggcccgcgaggacccaagggagacaggggccgtgccggtatg
cccggcttccccggtatcagcggagttcccggtacgatgggaccgcctggcttgccaggt
cgccccggtatggacggctgcaatggaacggacggtgcacctggacttacaggtctccag
ggagagcaaggacctagaggtttcccgggcccgagcggcgttaagggtgacaagggagag
gcagcgtacgctgggttgttccctaagggacagaagggtgaacctggaagggacggcgtg
agaggtcttccgggcactccaggattccagggacctcaaggtcctcagggagccaagggt
gaaagaggaccagaggggccacttggtcccgtcggcatcaaaggcgacaaaggacaaatg
ggtttgggcttcgaaggacctgcgggagacaagggagagaaaggacctcctggccccccg
ggtgactccagctacattcacatgccaccaggctcggtggtcggccccgtaggcgacaag
ggagaaaagggtgaccggggtgagaggggagtggacggtgctaagggagagccgggcatc
agcggcgcccccggaggtcccggtgagataggcaaacacggcgagaaaggtcttccgggc
cagcccggcctaccgggtcgctccggattccctggacctgctggaccggagggacaaaag
ggtgaccgcggcgtcgatggaatcagcggcctccccggccgtcccggcttgaagggcgag
cctggccacgacggcccggccggtctcactggacttcgaggacctcctggcccccctgga
ggtggtaagggcagcccaggccccccaggcccgcaaggaccccgtgggtaccccggcgcg
ccgggacccaagggtttggatggcttcgacggtccgcagggtctacgaggtccgcagggc
aatcctggtggccccggagttcccggatctcccggaccggaaggagcgcccggcgagaaa
ggcagcaagggtgactctggcctccctggtttccctggagaggtgggacctcgagggtat
cccgggccgcaaggacctccgggtctgaggggtctcaatggagaaaagggccattccatc
cccggtcccaaaggcatggacggtctgccgggtcgcgacggtgagaaaggaaacaaggga
gaaagaggtttccctggacttcgaggtttccctggagactcaatggaaggcatacccggt
gcccctggactaccagggtaccctggagaaaagggtgctgacggccgacctggaatcccc
ggcaccccgggcggacagggccccaagggagatatcggaggacgctgcactgactgccga
cctggaggtcctggagaaaagggagaccgcgggcgagacggccgagacggggaacccggc
atcatgggaccagctggagagcgcggcacccctggagacactggaccagacggcctcccc
ggcatccccggccctgctggcaaaccgggtattgacggcattcctggagtacccgggccc
gagggcccagctggacgcgacgccatcgtgcctctgaacctggtcaagggactgcccggc
ccccctggtctgcgtggagagccaggacgagagggtccgttcggaccgccaggccccgtc
ggagaaaagggctcgcccggccccatgggcttccccggtctcaagggcgacaagggcttc
cctggagtgcgcggcctcgacgggagtcctggccgcccaggctatccgggtgccaaggga
gagaagggcttaagtatcaagggcgaagctggcctgcccggtcgcgacgggtacaagggt
gacgcgggtcccaaaggtctgatgggtgagaagggtctccccgggcagtgccccacaccg
gcagagatacgcgaaggcatcaagggtgagaggggagctgagggccagaggggacctcag
ggacccactggagaacccggatatcctggcgccaagggcatccagggtatctctggatta
acgggcgcccctggtcccatcggagagcccggccccgtcggacccagaggactcccgggt
ccacgtggagagaagggcgatttaggtcccatgggcttccctggtgagaagggacaagac
ggcctgcccggcgtgccggggctaccaggatacaaaggtactaagggagaggcgggcata
ccagctgttgggccacctggacctccaggctacccaggactcaagggcgagaagggactg
cctggtctctctggcaggtttggaaaggatggagctccaggtctgcctggcttcgcaggc
gagaaaggagacttgggaatgcctggccttaacgggttgcccggtccccagggacagaag
ggagatccaggtccatttggacctgatggtccacctggccttccaggtcgacctggggcg
gatggtactaagggtgagcctggacaggttggcctacccggccgcgcaggacaggttggc
ttccctggccctaaaggagagcccggaccagctggctttgatggacctaaaggattcaca
ggacaaagaggagcccctggtgcgcctggtacacctggcatggatggacagcctggcgtg
aagggcgagcccggtcctgaaggataccgaggactgcctggccccatgggagtgcaagga
cttactggattacccggcccctatggaccaaagggagacatcggcctccctggacctcag
ggactctcagggttgcccggcatccctggagcgaagggagagcctggacctgaaggctta
ccaggacgcaagggagagcccggccccgtgtcggctaagggtcagaagggagaggctggc
ctgcctggcctgcgcggtccccccggccccaagggctacgacggcctcaccggactcaag
ggcgagcctggcagacccggcatcggcctgcccgggcggaagggagacatcggtctgacc
ggcagacccggtctggacggcaggcctggcgacaagggagaccgtggcgacatgggcttc
cctggactcaagggagaccccggtctagcaggactccagggagcgcccggcatgcccggt
gcggacggcatgcctggcgcggaggggctgacaggaccgcagggtcctcctgggtacaca
ggcctcaagggagacgagggaaggcctggatatcctggactcaacggcactaaaggggag
atgggcccacccggtcccgccggcccactcggcttccccggcgaacgaggagacaaaggc
gaccgcggtccccccggccccatcgtggacgtcaagggagacaagggagagcctggccga
cccggactgcctggactgaccggcgacaagggcgtccaaggcctggacgggcttcctgga
cctgctggcgaaaagggtgacgttggcctgcctggtggccctggtcttccaggagcacct
ggctaccctggcgctaaaggagagcctggtctgactgggccgcctggtttccctggcctc
actgtgaagggagaaaagggattgtctggactccccggcaaattcggagcggctggactg
aacggatacccaggagaaaagggtgaccgaggtctccctggactgcccgggcgctctgga
caagacggtctttctggcctcccgggacagaagggcgacaagggcaacgctggactcccc
ggactgaacggtgcccctggggaggttggcgagcgcggtctgcccggcagggaaggcttc
cccggtgtccccggcctcaagggcgacgtcggcccgcccggcctctacggcgccccaggc
gagaagggtgacgctggcaggcccggcagtcccggctacagcggcagtcccggcctgaag
ggtgacagaggcctggatggcttccccggcgctcccggcccagtcggcccgcccggcgaa
cccggcctccccggcccagccggcctgccgggtgcccctggcagagacggcgccaagggt
gagaagggagagtcgccgccactgccgccccctggaccaaagggtgaccgcggtgtggcc
ggcctccccgggcgccccggagcgcgcggcgagaacggcctgagcggcatgcctggcctg
cagggagtcaagggtgagcgcggaagcccagggctggacggccctccgggtctgccgggt
ctgacgggagacaagggcgacgccggcctcgacggtcccccgggacagccgggtctcgcc
ggcgagcccggtgccaggggcatcccgggcgcctcctgcagcgcgcagggcgactacctc
actggcatcctgctcgtcaaacacagccagagccagtacgtgcctcagtgcgagccgggc
cacatcaagctctgggacggctattctctgctctacatcgaaggaaacgagaagtcacac
aaccaggatctaggtttcgccggatcttgcgtgcgcaagttcaacacgatgcccttcttg
ttctgcgatttcaacaacgtttgcaactacgcgagccgcaacgacaagtcatactggttg
tcgacgacggaggccatccccatgatgcccgtcgaggaccgccagatctccaaatacatt
tctcggtgcactgtgtgcgaggcacccgctaacgtgatcgccgtgcacagccagtccctc
aaggtgccggactgcccggccggatggtacgacctctggaacggctacagcttcgtcatg
cacaccggcgcgggcgcggagggcggcggccagtcgctggccagccccggctcgtgcctc
gaggacttccgcgcgacacccttcatcgagtgcaacggcggacgaggcacctgccactac
ttcgccaacaagctcagcttctggctcgccaccatcgagcccggccaggagttctcgcgc
cccaactcacagaccctcaaggcgggcaacctgcgcgaccgcgtgagcagatgctcagtc
tgcatcaagcgcacttag
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