Frankliniella occidentalis (western flower thrips): 113203815
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Entry
113203815 CDS
T07591
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03013
Nucleocytoplasmic transport
foc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113203815
03015 mRNA surveillance pathway
113203815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foc03019
]
113203815
Enzymes [BR:
foc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113203815
5.6.2.5 RNA 5'-3' helicase
113203815
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113203815
mRNA cycle factors
Common to processing body (P body) and stress granule
113203815
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
DEAD
SLFN-g3_helicase
ATPase
Helicase_RecD
NPHP3_N
AAA_16
nSTAND3
SRP54
AAA_22
AAA
Motif
Other DBs
NCBI-GeneID:
113203815
NCBI-ProteinID:
XP_052129981
UniProt:
A0A9C6X6D8
LinkDB
All DBs
Position
Unknown
AA seq
1125 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEGELLGADTQGSEFDFNDFTIPSQSQTQASQIDAGQSQATQ
NQINGDSKPNGLEINVAITTQKLGELQFEEEEDDSYYNKELPAYACKYCGIHDPSCVVLC
NVCKKWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYSCGVRNVFVLGFI
PAKADSVVVLLCRQPCAAQNSLKDMNWDQEQWKPLISDRCFLSWLVKVPSEQEQLRARQV
SAPQITKLEDLWRDNVEATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVRLEADYD
KRLKESQTQENMEVRWDVGLNKKIIAYFNMAKTDTDMKLMHGDELRLRYLGDMHKPWSGV
GHVIKIPDNFGEEVGIELKSSSNAPSECTSNFVVDFIWKSTSFDRMQLSLRKFAVDDTSV
SGYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTG
KTVTSATIVYQLVKQSGGPVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIDSPVS
FLALHNQIRNMDAATELQKLQQLKDETGELSSVDEKRYRMLKKAAEKELLDAADVICCTC
VGAGDPRLARIKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVCADERKLSKMDF
PWPVPEKPMLFYVTQGQEEIAGSGTSYLNRTEAANVEKIATRFLRCGVKPEQIGVITPYE
GQRAYLVQYMQYQGALHSKLYQEIEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDPR
RLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLNFYKEQKVLVEGPLNNLKESMIQFSKPK
KLVNASNPGTHFMSTTVYDAREAMVPGSIYDRTGQMNGNPYFGRGAGGAGAGMGGMDMFA
RAHDPIGYISPERAQAALSNMPVPVGMFMNMAHVPPRFYNQHQQAMQARQNQRGRGPMPN
GRAPPKTKNRIGKTGLSQGAASQDNTQPYSQGIPLTQGMSQGMSQPGFSLSQPGLSQAEL
SQDSYMVGEFQSQMDGMLSQDSTYQGDRSAFYAGPTPGNQFSQPY
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgacgcgtacgggccgagctcgcagacactcacattcctagacacggaagaa
ggagaacttctaggcgcagacacgcagggctcagagttcgactttaatgattttaccatt
ccgtctcagagtcagacgcaggcatcgcaaattgatgcgggtcaaagccaggcaacacag
aatcagattaatggagatagcaaacctaatggtcttgaaataaatgttgctataacaaca
cagaagttgggagagctgcaatttgaagaggaagaagatgattcgtattacaacaaggaa
ttgccagcatacgcttgcaaatattgtggtatccatgatccaagttgtgtggtgctctgc
aatgtttgtaagaaatggttttgcaatggccgtgggaatacatctggatcccatattatc
aatcatctagtcagagcaaagcacaaggaagtgactttacacaaagatggacctctgggt
gaaactgttctagaatgctattcttgtggggtccgcaatgtatttgtgctgggttttatt
cctgccaaagcagattctgtagtagttctcctgtgcagacaaccctgtgctgctcaaaat
tctcttaaagacatgaattgggatcaagagcagtggaagcctctcatttcagacagatgt
tttctatcatggcttgttaaagtaccatcagaacaagagcaactacgagctcgtcaggtt
tccgcacctcaaattacaaaactggaggatttatggagagataatgttgaagccaccttc
caagatcttgaaaagcctggtgttgatgaggaacctcaacaagttctcctgcggtatgaa
gatggctatcaatatcaaaatatatttggtccattggtgaggcttgaagcagattatgac
aaaaggctgaaagaaagtcaaactcaagaaaatatggaagtccgctgggatgttggttta
aacaagaaaattattgcatatttcaatatggccaaaactgataccgatatgaagctaatg
catggcgatgaattacgcttgagatacctcggagatatgcacaagccttggtctggtgtt
ggtcatgtcattaagattcctgacaactttggggaagaggttggaattgagttaaagtca
agcagcaatgctccatcagaatgcacctctaactttgttgttgactttatttggaaatca
acgtcattcgatcgaatgcaattgtctttaaggaagtttgctgttgatgacacttctgtg
tctggttatatttaccacagacttttgggtcatgaagttgaagaagttttattcaggtgt
cacttacccaaacatttttctgcaccaaatctaccggacttgaaccgttcccaggtttat
gctgttaaacatgctttgcaacggcccctctcccttattcaagggcctcctggtactggg
aaaactgtaacctccgcaacaattgtctatcaacttgtcaagcaaagtggggggccggtt
cttgtctgtgctccatccaacattgcagttgatcagctcactgaaaaaattcacaagact
ggtctgaaagttgtcagattgtgtgctaagtctcgtgaagctattgactccccagtgtct
ttcctggcattacataatcaaatcagaaacatggatgctgccacggaacttcagaaactg
cagcagcttaaggatgagacaggggaactgtcttcagttgatgagaaacgctaccgaatg
cttaagaaggctgcagaaaaagaattgctagatgctgctgatgttatctgctgcacctgt
gtaggtgctggagatccccgcctagcacgaatcaaatttcattcaattcttattgatgaa
agtatgcaggcaacagaacccgaatgtatggtgccagttattcttggggcgaagcagttg
atattagttggtgaccactgccagttggggcctgtggttatgtgcaagaaagcggcaagg
gcaggcctgtcccaatcattgtttgagcggctggttgttttgggtattcgaccattccgt
ttagaagttcaatacagaatgcacccagaactatcaagatttccttctaacttcttctat
gagggttctctgcaaaacggtgtctgtgctgatgaaaggaaactaagtaaaatggacttc
ccatggcctgtaccagagaagcctatgctattctatgttacacaaggtcaggaagaaatt
gctgggtctggaacttcatacctaaatcgaactgaagctgcaaatgtagaaaaaatcgct
acacgctttttgcgctgtggtgtaaagccagagcaaattggtgttattacaccatatgag
ggtcaacgagcttatttggtgcagtacatgcagtaccagggtgctcttcattcaaaactc
tatcaagagattgaagtagccagtgttgatgctttccaaggacgagagaaagatttaatt
atcatgtcatgtgtgcgttcaaatgagcaccaaggtattggtttcttgaatgacccaagg
cgtctcaatgtagctttaactagagcaaagtatggtatcattattgttggtaacccgaaa
gttctctcaaagcaacctttgtggaaccacctactaaatttctacaaggaacaaaaagtt
ttagttgaaggtcctcttaacaacttgaaagaatctatgattcagttctctaaacccaag
aagttggttaatgccagcaatcctggtactcactttatgtcaacaacagtttatgatgcc
agggaggctatggtacctggatcaatctatgacaggacaggccagatgaatggtaatcca
tactttggacggggtgctggtggcgcaggagcaggaatggggggaatggacatgtttgcc
cgagcccatgatccaattggttacatatctccagaacgagctcaggcagctttgtccaat
atgcctgttccagtcggtatgtttatgaatatggcacatgttccaccccgattctataat
cagcatcaacaagctatgcaagcacgacaaaatcagcgtggacgtgggcctatgcctaat
ggaagagctccacccaaaactaagaatcgcattggtaagacagggctcagccaaggtgct
gctagccaggacaacactcagccttacagtcaaggcattcctcttacacagggaatgtct
cagggaatgtcacagcctggttttagtctctctcagcctgggttgtctcaggccgagtta
tctcaggatagttatatggttggggaattccaatcccaaatggatggtatgctgtctcag
gactcaacctatcaaggtgatcgctctgcattctatgctggtccgacgccgggaaaccaa
ttttcacagccttactga
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