Frankliniella occidentalis (western flower thrips): 113206109
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Entry
113206109 CDS
T07591
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113206109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foc03019
]
113206109
03041 Spliceosome [BR:
foc03041
]
113206109
03009 Ribosome biogenesis [BR:
foc03009
]
113206109
03016 Transfer RNA biogenesis [BR:
foc03016
]
113206109
Enzymes [BR:
foc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113206109
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113206109
Spliceosome [BR:
foc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113206109
Complex C
U4/U6.U5 tri-SnRNP related factors
113206109
Ribosome biogenesis [BR:
foc03009
]
Eukaryotic type
Pre-60S particles
Helicases
113206109
Transfer RNA biogenesis [BR:
foc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113206109
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
113206109
NCBI-ProteinID:
XP_052123833
UniProt:
A0A9C6U8I5
LinkDB
All DBs
Position
Unknown
AA seq
1033 aa
AA seq
DB search
MADFSDDLFSVFEQTNENGHVPEPEVSSKDEPSTSSSSRSSLPEDNQKTAIKRELEDEDE
DGSKKAKLEGLVDDINLDEISSRIKVHTVETLEACTHEVAVPPNMDYVPLKAATGKPAKE
YPFSLDPFQKEAIICIENNQSVLVSAHTSAGKTVTAEYAIAQSLRDRQRVIYTTPIKALS
NQKYREFYEEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEVMREVGWVIFDEIH
YMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVVHLHKQPCHVVYTDYRPVP
LQHYIFPNGGDGIHLVVDENGQFKEDNFNTAMTVLANAGENAKAPQPGRRGGVKGGNDTN
CFKIVKMIMERNFAPVIIFSFSKKDCELYAMQMAKLDFNNLEEKKLVDEVFNNAMDVLSE
EDRLLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFAEGLIKALFATETFAMGLNMPA
RTVMFTGMRKFDGKDFRWVTSGEYIQMSGRAGRRGLDEKGIVILMVDEKVSPEVGRDMVQ
GLPDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNHSIIPELYQKVCQLQEDYD
SLIVPKEPQAESYYHIRTQLESLGKVYQSYITQPQYLIPFLQPGRMVKIKHESDEFDWGI
IINFKKQEAPSGRGRGRGGHSNPSRDPPQVIVEVLLHVSGEENQPPKPCPSGVTGDMEVV
PVLSSLITKISSLRIHYPKDLRPPDNRKSVYKTLQEVQKRFKDGPPLLNPVTDMHIKDDV
FVDSVRQIETFEQRMYAHPLHNSDDLQEIYAQYLKKVELGNQLKLVKGELKHAKSLLHMD
ELKCRKRILRRLGYCTAADVIELKGRVACELSGCDELLMTEMIFNGLFNDLTVAQCVSLI
SCFVCDEKSSENPKKSEELSGPLRQMQDLARRIARVSAEAKLDIKEEDYVGQFKPFLMDV
VYAWCKGSSFLDICRMTDIFEGSIIRCMRRLEEVLRQLCQASKNIGNTDLENKFSEGIKL
MKRDIVFAASLYL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggcagatttttcggacgacttgtttagcgttttcgaacaaactaatgaaaatggacac
gtacccgagccagaagtttcgtcgaaagatgaaccgtcaacgtcctcgtcgtcccggtca
agtttgcctgaagacaatcaaaagacagctatcaaacgggagctagaagatgaggacgaa
gatggtagcaagaaagcaaaacttgaaggtctggttgacgacatcaacttggacgaaatt
agttcccgaattaaagtgcacacagtggaaacattggaggcatgtacacatgaagtcgca
gtgccgccaaatatggattatgtccccctaaaagcagctacaggcaaacctgcgaaggag
taccccttttctcttgatcctttccaaaaagaagctatcatttgtattgaaaacaatcaa
tctgtccttgtatctgcccatacatctgctggtaaaacagtaacagcagagtatgccatc
gctcaatctctacgagataggcagagggttatttacacaacacctatcaaagcgctcagc
aaccaaaagtaccgagagttttatgaagagtttaaagatgttggtttagtgactggtgat
gttaccatcaatccatcagcatcatgcctcattatgacaactgagattttaaggaatatg
ctttacagaggctcagaagtcatgagagaagttggttgggtcatttttgatgaaattcat
tacatgagggacaaagaacgaggtgttgtgtgggaagaaacccttattttgctaccagat
aatgtccactatgtatttttgtcagctacaatccccaatgcacgtcagtttgcagaatgg
gttgtacatcttcataaacagccatgtcacgttgtatacacagattaccgtccggtgcct
ttgcaacactacattttcccaaatggaggagacggaatccatcttgttgtggatgaaaat
ggtcagtttaaagaagacaactttaacacagcaatgactgttctagccaatgctggtgaa
aatgccaaagctcctcagccaggtcgcagaggaggtgttaagggaggaaatgacacaaat
tgcttcaaaattgtaaaaatgataatggagcgaaattttgctccagttatcatcttttcc
ttcagcaagaaggattgtgaactttatgctatgcagatggcaaagctagattttaataat
ctggaagaaaaaaaacttgtagatgaggtattcaataatgctatggatgtactttctgaa
gaagatagactgctacctcaggtagaaaatgtgcttcctctcctgagacgtggcatcggc
attcatcatggaggtctgctgcctattttgaaagaaactattgaaattctgtttgctgag
ggacttatcaaagcactatttgccactgaaacatttgccatgggcttaaacatgcctgcc
agaactgtaatgtttactgggatgaggaaatttgatggaaaagatttcagatgggtcaca
tcaggtgaatatattcaaatgtctggaagagctggacgtcgaggacttgatgagaagggt
attgtcatccttatggtggatgagaaagtatctccagaagtgggccgtgacatggtacaa
ggtttaccagatccaatcaactcagctttccacttaacttacaacatggtgttaaactta
cttagagtagaggagattaatccggagtacatgttggagaggagtttcttccaattccag
aaccactcaatcataccagagctataccaaaaggtgtgtcagcttcaagaagattatgat
tcccttattgttccgaaagaaccacaagctgagtcttattatcacattcgtactcaactg
gaaagtttaggaaaggtgtaccagagttatataacccagccacagtatttgatacctttc
ttacaaccaggcaggatggttaagataaaacatgaatcagatgagtttgattggggaatc
atcatcaattttaaaaaacaggaagcaccctctggaagagggagaggaagaggtggtcat
tctaatccatccagggacccacctcaggttattgttgaagttttattgcatgtctctgga
gaagaaaatcaacctcccaaaccctgtccctctggagttactggtgacatggaagtagtt
ccagttttgagctctttaattactaaaattagttctcttagaattcattatcctaaagac
ctaagaccaccagacaaccgcaagtcagtgtacaaaactctacaggaggttcaaaagagg
ttcaaggatgggcctccccttcttaatccagttactgatatgcatatcaaagacgatgtg
tttgtggattctgtaaggcaaattgaaacatttgaacagcgcatgtatgcccacccactt
cacaacagtgatgacctacaagaaatttatgctcagtatctaaagaaagttgagctaggc
aaccaattaaaacttgtcaaaggagagctaaaacatgctaaatctttgcttcacatggat
gaactaaagtgcagaaaaagaattttgagaagacttggttactgtactgcagctgatgtc
atagaactaaagggtagagtggcctgtgaactcagtgggtgtgacgaacttctcatgact
gaaatgatatttaatggcctattcaatgacttgacagtagctcaatgtgtttcattaatt
agttgctttgtatgtgatgaaaagagttctgaaaaccccaaaaaatccgaagaactgtct
ggtcctttgaggcagatgcaggacttggctcgaaggatagctcgagtcagtgcagaggcg
aagttagacattaaagaagaagattatgtcggacaatttaagccatttttgatggatgtt
gtttatgcttggtgcaaaggctcatcgtttcttgacatttgcaggatgacagacattttt
gaaggaagcattattcgatgcatgagaagattggaagaagttttaaggcaactttgtcag
gcatcaaagaacataggaaacacagaccttgaaaacaaattcagtgaaggaattaaactt
atgaagagagatattgtctttgctgctagtttgtatctctag
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