Frankliniella occidentalis (western flower thrips): 113206388
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Entry
113206388 CDS
T07591
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113206388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foc03019
]
113206388
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
113206388
mRNA cycle factors
Common to processing body (P body) and stress granule
113206388
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
zf-AD
TPR_8
Motif
Other DBs
NCBI-GeneID:
113206388
NCBI-ProteinID:
XP_026278241
UniProt:
A0A6J1SI29
LinkDB
All DBs
Position
Unknown
AA seq
958 aa
AA seq
DB search
MGLNDAVQALKKADILKEKVDSCRDLLNDGDAWVWQQQLQRIYQQVLLQDLEYALDCKVE
QELWNYGFKNYICILQNMVKDKKNPKRTESQAMLTWCLEAASGFYLTLLQEICTAFDLDL
SCRRRDSVYGITDFNIAPNGLIQPNTSSCSYICQHCLVHLGDIARYRNQNRQAESFYRHA
VQLSPHSGQPYNQLALLDSSRGDRLGTVFHYVRSVTVKHPFPAAATNLRRMFGRFAEDQL
NLDGRSKLTVQEYVALFLKFHGLLYLGADLTACSRTIRLLTDTLTAQVATESFTSRKLVQ
MLAVNLCALHQARGNIFPQENDKIWDKQSHLSQKLSSTQKQAKGLILDLMAGSLSALLLP
VYTIRESEALLEYFALPSIKLTVDWIRLEPDVLNDPAFTSRLQIWPSLCKLLNGIQCLLD
SSDQSNKLSSVPLPEDRELQGFLPLNKAMQDLRFNSEETKVDTMEINRLRASRLVNFGVW
LSKQEEIAVITSRETHHESSTTTWSFEAIASGQAPSSELIRELEQLSLGVGNCPQQPSPS
PSDAGSWGGSSTSTPGGAVSPPPVPPVILEQITQVPEKRTGILKPQGSLEKSREKECVDM
EEGGLTVGSGRRIARQNIAMQTILRKGVTLAPETDVKQVSFKTPSPTALDRSDGWCSQKP
SISAKPIQPQPVVPQQSHLLPQPPVQIPSKFSQPPPPLQQLQQQAQARVVHVPPPPMFPL
PPMSVPPPSIKPNMVDATGHKFVVPENPMQMHPPYGGWQEEQHDSNNRNPWWPVSSEQPP
HPSNTRSLTHNIPLSMMNAPVSWGSVHPTQQPFRPAMHQHRASHFQQQGSNANQTQSSRL
LPPHQASMQNLQQLYPSHSVPAPSQQERDSPNNGHSFSPYSLFSANNWLSPAISPGRGAV
EAGGGPEFPKDDFEQNSGSGAAIMGAQSLWSGPGPSPLERLLEQQKQLREGPSPKSGT
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgggccttaatgatgcagtacaagcactgaagaaagcagatatccttaaagaaaaggta
gacagctgccgtgaccttcttaatgatggagatgcatgggtatggcaacagcagttgcag
cgtatttaccagcaagtacttttgcaagacttggaatatgccttggattgtaaagtggaa
caggagctttggaactacggattcaagaactacatctgcatacttcagaatatggtgaaa
gacaagaagaatccaaagagaactgagtcgcaagctatgttaacatggtgtttagaagca
gcaagtggattttacttgacactgttgcaagaaatttgcactgcctttgatcttgatttg
tcttgccgaaggagggattccgtttatggtatcactgactttaacattgctcctaatgga
ttgatacaacccaatacatcatcatgttcttatatttgtcagcattgtttagtacatctt
ggagatatagctcgatatcgtaaccaaaataggcaggctgaatcattttacagacatgca
gttcagctctcaccccattctggccaaccctataatcagctggctcttctagattctagc
cgaggtgatcgactaggaactgtatttcactatgtgcgaagtgttacagtaaagcaccca
ttccctgctgctgcaacaaatttaagacgaatgtttggtagatttgctgaagatcaattg
aatttggatgggcgtagcaaactaactgttcaagagtatgttgccctgttcctcaagttt
catggcttactttaccttggtgctgatcttacagcctgtagtcgcaccattcgtctcttg
actgatacattaactgctcaggtggcaacagagagctttacatcaaggaaattggttcaa
atgttggctgtcaacttatgtgccttacaccaagcccggggaaatatttttcctcaagaa
aatgataaaatttgggacaaacagagccatctttcgcagaaattgtcttcaacccagaag
caggcaaagggtcttattttagatctcatggctggctctttgtcagctcttctactgcca
gtgtacaccataagagagagtgaggcactgttggaatattttgctcttccatcaataaaa
ctcactgtggactggataagacttgagcctgatgtgttaaatgatccagctttcacatcc
cgcctgcaaatctggccaagcctttgcaaactgttgaatggcattcagtgtttgctagat
tcctctgaccaatctaataaattgtcatctgttccactcccagaagatcgtgagcttcag
ggctttttgccgcttaacaaagctatgcaggatttgaggtttaattctgaagaaacaaaa
gttgatacaatggaaataaatcgtttacgggcttctagacttgttaattttggtgtctgg
ttatccaagcaagaagaaattgcagtaataacatcaagagagactcaccatgaaagttct
acgactacttggtcatttgaagctattgctagtgggcaggctccatccagtgaattgatt
cgagaacttgaacagttaagtctgggtgtgggcaattgtccacagcaaccatcaccatcc
ccatctgatgcaggcagttggggtggaagtagcacatcaactcctggaggtgccgtgagc
ccccctcctgtcccacctgtcatcctggaacagatcacacaggtcccagaaaagagaact
ggtattttgaagccccaaggttcacttgaaaagtcaagggaaaaagaatgtgttgacatg
gaggagggaggacttacagtgggatctggccgtagaatagcgagacaaaatattgccatg
cagacaatattgcgcaagggggtaacactagcaccagagactgatgtaaagcaggtgtca
tttaagactccatcgcctactgcacttgaccgcagtgatggttggtgcagccagaaaccc
agtatcagtgccaaacctatacaaccccaaccggttgtcccacagcagtctcacctactt
cctcagccacctgtgcaaattccatctaaattctcacagccacccccacctcttcagcaa
ttacaacagcaagcacaagccagggtagtgcatgtgccaccaccgccaatgtttcctctg
ccaccaatgtctgttcctccacctagcattaaacctaacatggttgatgccactggccac
aaatttgttgttccagaaaatcctatgcaaatgcatccaccatatggagggtggcaagaa
gagcaacatgattctaacaacagaaatccctggtggcctgtatcctcagagcagcctcca
catcctagcaacaccaggtctctgacgcacaatattcccttgagtatgatgaatgcgcca
gtcagttggggatccgtgcatcccactcagcagccgttcaggccagctatgcatcagcat
cgagcgtctcatttccagcagcagggatctaatgccaaccaaacacaatcttcaaggctt
ctgccgccacaccaagcctctatgcagaacttacaacagctgtacccatctcactcagtt
ccagcgcctagtcaacaggaaagggattctcccaacaatggccacagtttttcaccttac
tccctctttagtgccaataactggctatctcctgcaatatcaccagggcgaggggcagtg
gaagctggaggaggtcctgagttcccgaaagatgactttgaacagaatagtggcagtggg
gctgcaataatgggggcacagtccttatggtctggtcctgggccttctcctcttgagaga
ctgttagaacagcagaaacagttgagggaggggccctcacccaagagtggaacgtga
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