Frankliniella occidentalis (western flower thrips): 113206584
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Entry
113206584 CDS
T07591
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113206584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foc03019
]
113206584
03041 Spliceosome [BR:
foc03041
]
113206584
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
113206584
Spliceosome [BR:
foc03041
]
Complex B
Other components
Prp19-related factors
113206584
Complex C
113206584
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
TPR_10
TPR_7
DHR-2_Lobe_A
ARM_TT21_C
NRDE-2
PPR
Motif
Other DBs
NCBI-GeneID:
113206584
NCBI-ProteinID:
XP_052122713
UniProt:
A0A9C6U773
LinkDB
All DBs
Position
Unknown
AA seq
859 aa
AA seq
DB search
MKLPDVARKDLHIVFTEEDLPYEEDILRNPFSVKHWLRYIEHKKGAPKHALNIIYERALK
ELPGSYKLWYNYLKLRRRQSKGRCIIDPIYEDINNAYERSLVFMHKMPRIWMDYCQFLTE
QNLITRTRQAFDRALRALPITQHPRIWPLYLTFVKKHDMAETAVRVFRRYLKLCPEDTED
YIEYLTSINRLDEAALKLGFIVNHDDFVSKHGKSNHQLWNELCELISKNPDQVRSLNVDA
IIRGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVKTVRDFTQVFDAYAQF
EELSLSKRFDQAQNVSNPSEEDDVELDLRLARFEHLMERRPLLLNSVLLRQNPHNVHEWH
KRVQLYEGQPHQIISTYTEAVQTVDPKLAVGKLNSLWVAFAKFYEENGQLDDARVVFEKA
TQVPYVKVEDLAAVWCEWAEMEIRHERPEAALKLMHKATVMPNHKAAYHDETETVQNRLY
KSLKLWSLYADLEESFGSFKSCKAVYDRIIDLKIATPQIIINYGLFLEEQNYFEEAFKAY
EKGVALFRWPNVYDIWNTYLTKFLNRYGGTKLERARDLFEQCLEKCPPKFAKALYLLYAK
LEEEHGLARHAMAVYERATSAVLPEEMFEMFNIYIKKAAEIYGVPKTRQIYEKAIEMLGD
NNSREMCVRFAEMETKLGEVDRARAIYAHCSQICDPRVTADFWQAWKDFEVRHGNEDTMR
EMLRIKRSVQATYNTQVNMMSAQMVNVSGSAGTVADLAPGVKDGMRMLEAQAAEVAQMES
RLVMPKGGNILFVRGETQGGDREGARVANPDEIEIDDDEEEGSDGSEKEEEADLPIQKQI
VPSEVFGSLKQNEDEDEEV
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttcctgatgtcgcaaggaaggatctccacatagtatttactgaagaagacttg
ccctatgaggaagacatcttacgtaaccctttctctgtgaaacactggctccgctatatt
gaacataagaagggcgcacccaagcatgcgctaaatataatctatgaacgtgctctgaaa
gagttacccggcagttacaagctttggtacaactatctaaagctaaggaggcgacagtct
aaaggtcgatgcatcattgatcctatctatgaagatatcaataatgcatatgagcggtcc
ttagttttcatgcacaagatgccaagaatatggatggactattgtcaatttttaactgag
cagaacctgataaccagaactcggcaagcctttgatagagctttacgtgcattgccgatc
acacaacatccccgaatttggccactctatttaacatttgtcaaaaagcatgacatggca
gaaactgctgttagagtattcagaagatacttaaagctttgtccagaagacacagaagat
tacattgagtatctaacatccataaatcgattagatgaagcagctttgaagttaggcttt
attgtcaatcacgatgactttgtgtccaaacatggcaaatcaaatcatcaactttggaat
gagctttgtgagctcatttctaaaaatcctgatcaagttaggtctcttaatgtggatgcc
atcattcgtggtggattgagacggtacactgatcaacttggacacttgtggaactcatta
gctgactattatgttcgcagtggtttgtttgaaagggcgagggatatatatgaagaagct
attcaaacagtaaaaacagtgagagatttcactcaggtttttgatgcatatgcacaattt
gaggaacttagcttaagtaaacggtttgatcaagctcaaaatgtttcaaatccttctgaa
gaagatgatgttgaactggatctccgccttgctcgatttgagcatttgatggaacgacga
cctcttctactcaactctgtacttcttcgtcaaaatccacataatgttcatgagtggcac
aagagagttcaattatatgaagggcagcctcaccagattatttctacttacacagaagca
gttcagaccgtggatccgaaactggctgtcgggaaactgaacagtttgtgggtggctttt
gccaaattttatgaagaaaatggtcagcttgatgatgctagagttgtgtttgaaaaagcc
actcaagtaccctatgtgaaagttgaagatttagcagcagtttggtgtgaatgggctgag
atggaaatcagacatgagagaccagaagctgcattgaaactcatgcataaagcaacagtt
atgccaaaccacaaagcagcttatcatgatgagacagaaacagtacaaaatagactttac
aaatcacttaagttatggtcattatacgccgatttagaagagagctttggttcatttaag
tcttgcaaagctgtttatgacagaataatagatcttaagatcgcaacacctcagataatc
atcaactatggtctatttttggaagaacaaaactactttgaggaagcattcaaggcatat
gagaagggcgttgctttgttcagatggccaaatgtttatgatatttggaatacctattta
acaaaattcttaaaccgctatggtggaaccaaattggaaagagctagagacctgtttgag
caatgtttagagaagtgtcctccaaagtttgcaaaagctttgtaccttttgtacgcgaaa
ctggaggaagaacatggcttagccagacatgccatggctgtttatgaacgtgctacaagt
gcggttctaccagaagagatgtttgagatgtttaacatctatattaaaaaagctgcagag
atatatggagtacctaaaacacgtcaaatttatgaaaaagccattgaaatgcttggagat
aacaactctagagaaatgtgtgtacgatttgctgaaatggaaaccaaacttggtgaagtt
gatagagctcgagctatttatgctcattgcagtcaaatttgtgacccaagagtaactgca
gatttctggcaagcttggaaggactttgaagtgcgccatggcaatgaggataccatgcga
gaaatgctacgtatcaaacgtagtgtgcaagcaacatataacactcaggtgaatatgatg
tcagcgcaaatggttaatgtgtctggatctgcgggaacagttgctgacttggctccaggc
gtaaaggatggtatgcgaatgctggaagcccaagctgcagaagttgcccaaatggaatca
cgtctagttatgccaaaaggtggaaacattctttttgtgcgcggagaaactcaaggtgga
gacagagaaggagcccgtgttgcaaatcccgatgagattgagattgatgatgatgaagaa
gaaggttcagatgggagtgagaaggaggaggaagctgatcttcctattcaaaaacaaatt
gtgccttctgaggtctttgggagtttaaaacagaacgaagatgaagatgaagaagtttag
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