Frankliniella occidentalis (western flower thrips): 113207057
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Entry
113207057 CDS
T07591
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03013
Nucleocytoplasmic transport
foc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113207057
03015 mRNA surveillance pathway
113207057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foc03019
]
113207057
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113207057
mRNA cycle factors
P-body specific factors
113207057
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF3140
Motif
Other DBs
NCBI-GeneID:
113207057
NCBI-ProteinID:
XP_026279199
UniProt:
A0A6J1SDE6
LinkDB
All DBs
Position
Unknown
AA seq
1276 aa
AA seq
DB search
MAIEEASVVAPGAITSDIMDDATGSTVQAPAEGSYEWLAKIVFKEDTEPLLLPSSKSSIV
VAVSNSNFQEDSLQAESTGSPQDPQSTLENTISGAGVLPNTLSKDAESSDNIKDNPVDTN
PVDDSQKAGAQHILHELDVRLAFKAKLRLLNQRAAASRPDERDIANLDSNLKKNSGFVRK
LRNFTVAQLEGLVRDMSTLNLSKYLSEAAAAIVEAKLKVTDVGAAVVLCSLFHQTYAEFA
PLLLENWQKVLSLKKDEKVANPSKLRVDLRLYGDLVSVALFPLKEALTLLGQILSALINA
DKEDHNNASIILSFCKHCGEDYAGLIPACLKNAAVLLNREVPRSTLLLPEKQKAVRTLLS
DYFASLCKHLLKDHRDLQALERQNRRILQTKGELNAERKERLENLQQQYQKLLNSAQAFA
DVLDQPMPKLPEDPIKCEDDSGLVVSGIGGFSDGDDGMFSGLSGLVGGLWEDEETQRFYE
DFPNMRDYLPGIKSRERELGSSPSPTPVAQVTEEVLDAELREEDLGNPDVVEPANVEDEP
DEVEQLTSLITQSSKQHLEQFLNHLPNCVNRELVDNAAAEYLLSLNSKNNKRKLVRVLFG
VPRTRLDLLPFYARLVATLHPVVPEIAQDLCHMLKQDFIYHVCKKDQINIESKIKVVRFI
GELVKFKMYPLIEGLYCLKVLLHDFTHHHVDMACALLETCGRYFLRRTESHQRTKIYLEQ
MMRKKSALTMDVRYVTMIENAFFFVNPPEGGTLKVKERPPIHSFVRKILYQDLSKPTTDK
VFRLIRRLNWEDKDLAAYTIKCLTAAWNVKYYNIRCLASLVAGLAVHQESVAPMVVDGVL
EDIRVCMEINHAKLNQRRVAMIKYLGELYNYRVVESNDIFKVLYSLIKFGVSYDPANPAL
LDPPDHLFRIRLVCTLLFTCGQFFNSGPSKQKLDYFIVFFQHYYWMKRESGYWASGDTVS
ALTGAGDGPSPFPMSIEYMFEDAILGLRPTLTLAKNIEEAVSAVELLESKLLAQLPKLTD
APGDNGELGTITEDSERETDGERENTDDTSSMDETEEDNGAESPYEDELDNILDDEDDDN
DDEEDMSDSAGIDNHDGDVVKIKRKEQEEASHEDKEFMDELEQMVSCSIQDHARNMSKPH
TVDISIPFHIRTNHKKTYEQLQEANENLNAEQSTVNFTLLTRRGNKQSFRNLSVPVSSEL
ALNLRCQEQAERMEMEKVKRLTLDINERLEEEDYQDMLASFQRPATVNLNRERRNRYQHP
KGAPDADLIFGPKRTR
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atggctattgaagaggcctctgttgttgcaccaggtgccatcacttctgacatcatggat
gatgctactggatcaaccgttcaagcaccagctgaaggatcatatgaatggctggcaaaa
atagtgttcaaagaagatacagagccactgctgctaccttcttcaaaatcctcaattgtt
gttgctgtatcaaattccaactttcaagaggattcactccaagctgaatctactggaagc
cctcaggaccctcagtccacattagaaaatacaatatctggagcaggtgtgctgcctaat
acattgtccaaagatgcagaaagcagtgataatattaaagataatcctgttgatacaaac
cctgtagatgactctcagaaggctggtgctcaacacattttacatgaactagatgttaga
cttgcatttaaagctaaactgaggcttttaaaccagcgcgctgctgcatcccgccctgac
gaacgcgatattgcaaatttggattccaatctgaagaaaaattcaggatttgtacgtaaa
cttcgtaattttactgtggctcaactggagggccttgttagagacatgtcaacattgaat
ctatctaagtatttgagtgaagcagcagcagccattgttgaagctaagttgaaggttact
gatgttggagcagctgttgtgctgtgcagtttgtttcatcaaacctatgcagagtttgcc
ccacttctccttgaaaattggcagaaagtattatccctgaaaaaagatgaaaaggtggcc
aatccatccaaattaagagttgatcttcgtctgtatggagatctggttagtgtggcgctc
tttcccctaaaagaggctctaacacttcttggtcagattctctccgctttgattaatgcc
gacaaggaagatcataacaatgccagtataattttgagcttctgtaaacattgtggggag
gattatgctgggttgatcccagcgtgcttgaaaaatgctgctgtgctacttaatagagag
gttccgcgaagtacacttttgctacctgaaaaacagaaggctgttcgcactcttttgagt
gattattttgcatccttgtgcaagcaccttttgaaagatcatagagatcttcaggcactt
gaacgacaaaatagaagaatccttcagacaaaaggagaacttaatgctgaacgtaaagaa
cgcttagaaaatttgcagcaacagtatcaaaagcttcttaattctgcccaagcttttgca
gatgttctagaccagccaatgccaaaactcccagaagatcccatcaaatgtgaagatgat
tcaggacttgtagtcagtgggattggaggcttctctgatggagatgatggaatgttttct
ggtctatctggacttgttggaggattatgggaagatgaagaaactcaaaggttttatgaa
gattttccaaacatgagagattacctgccaggtatcaaatcacgtgaaagagaacttgga
tcttcaccctcaccaacccctgttgcccaagtgactgaggaagttcttgatgctgaacta
agagaggaagatcttggaaacccagatgttgttgaacctgcaaatgttgaagatgaaccg
gatgaagttgaacaacttaccagtttaataactcagtcctcaaaacaacacttagagcag
tttttaaatcatcttcctaattgcgtaaatcgagaactggttgataatgcagctgctgag
tatctgctatcccttaattccaaaaataataaacgaaagcttgttcgggtcttatttggt
gtaccaagaactagactagatctgttaccattttatgcaaggcttgtggccactttacat
cctgttgtacctgaaattgctcaagatttatgccacatgctcaaacaagatttcatttat
catgtgtgcaaaaaggaccaaatcaacattgaaagtaaaatcaaggttgtccgtttcatt
ggagagcttgtcaagtttaaaatgtatcctctcattgagggattgtattgtctaaaagtt
cttcttcatgattttacccatcatcatgttgacatggcttgtgcccttcttgaaacatgt
ggtcgctactttttgcgcagaacagagtctcatcaacgcacaaaaatttaccttgagcaa
atgatgcgaaaaaagtcagcccttacaatggatgtaagatatgtcacaatgatagaaaat
gcatttttctttgtcaatccaccagaaggtgggacattgaaagtgaaagaacgccctccg
atccattcctttgttcgtaaaattctatatcaggatctaagcaaacccacaactgacaag
gttttcagacttattagaagattaaactgggaagataaagacttggcagcctacactata
aagtgtctaacagctgcctggaatgtgaaatactacaatattaggtgtctagcaagccta
gtggcaggcttagctgtccaccaggaaagtgtggctccaatggttgtagatggtgttttg
gaggacataagagtgtgcatggaaattaatcatgccaaacttaatcaacgacgagtggct
atgatcaaatacttaggagagctttataattaccgtgttgttgagagcaatgatatattc
aaggttttgtactctcttattaaatttggtgtatcatatgacccagccaatccagctctt
cttgatcctcctgatcatcttttccgaattcgtttagtttgcactttattattcacttgt
ggacagttttttaatagtgggcctagcaaacaaaaacttgactacttcattgtcttcttc
cagcattactattggatgaaaagggagagtggttactgggcttcaggagacacagttagc
gctctaacaggggcaggtgatgggccatctcctttcccaatgtcaatagaatacatgttt
gaagatgcaattttaggattaagacctactcttacacttgctaagaatattgaagaggca
gtttctgcagttgagcttttagagtcaaagctacttgcgcaattacctaaattaacagat
gcgccaggtgacaatggtgagcttggcaccataacagaggattcagaaagagaaactgat
ggtgaaagagagaacactgatgacacaagttctatggatgaaacagaagaagataatggg
gctgaatctccatatgaagatgagttggacaatatattggatgatgaagatgatgataat
gatgatgaagaagacatgtctgattctgctggtattgataaccatgatggcgatgtggtg
aaaatcaaacgaaaggagcaggaagaagcaagccatgaggataaggagtttatggatgaa
ctggaacagatggtctcatgcagcatccaagatcatgcacgtaatatgtcgaagccacat
actgtggacatctcaatcccattccatattcggaccaatcacaaaaagacatatgagcaa
cttcaagaggcaaatgaaaatctaaatgctgagcaaagcactgtcaattttactctgcta
acaagaaggggaaacaagcaatcattccgtaacctttctgtaccagtgagctcagagttg
gctttaaatctgagatgtcaagaacaggctgaacgaatggaaatggaaaaagtaaagagg
ctaaccttagatattaatgaaagactggaagaagaagattaccaagacatgcttgcgtcg
tttcagcgacctgccacagtgaatcttaatcgggaaagacgcaaccgttaccaacatcca
aaaggtgcacctgatgcagatctcatttttggacccaaacggacaagataa
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